Nucleic Acids Research, 2003, Vol. 31, No. 1 51-54
© 2003 Oxford University Press
The UCSC Genome Browser Database
Genome Bioinformatics Group, The University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA
*To whom correspondence should be addressed. Email: donnak{at}soe.ucsc.edu
ABSTRACT
The University of California Santa Cruz (UCSC) Genome Browser Database is an up to date source for genome sequence data integrated with a large collection of related annotations. The database is optimized to support fast interactive performance with the web-based UCSC Genome Browser, a tool built on top of the database for rapid visualization and querying of the data at many levels. The annotations for a given genome are displayed in the browser as a series of tracks aligned with the genomic sequence. Sequence data and annotations may also be viewed in a text-based tabular format or downloaded as tab-delimited flat files. The Genome Browser Database, browsing tools and downloadable data files can all be found on the UCSC Genome Bioinformatics website (http://genome.ucsc.edu), which also contains links to documentation and related technical information.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  L. Ed, H. Nomi, G. Mark, C. Raymond, and L. Suzanna Apollo: a community resource for genome annotation editing Bioinformatics, July 15, 2009; 25(14): 1836 - 1837. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Fang, C.-T. Ting, C.-R. Lee, K.-H. Chu, C.-C. Wang, and S.-C. Tsaur Molecular Evolution and Functional Diversification of Fatty Acid Desaturases after Recurrent Gene Duplication in Drosophila Mol. Biol. Evol., July 1, 2009; 26(7): 1447 - 1456. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. L. Bauer DuMont, N. D. Singh, M. H. Wright, and C. F. Aquadro Locus-Specific Decoupling of Base Composition Evolution at Synonymous Sites and Introns along the Drosophila melanogaster and Drosophila sechellia Lineages Gen Biol Evol, June 22, 2009; 2009(0): 67 - 74. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Podicheti, R. Gollapudi, and Q. Dong WebGBrowse--a web server for GBrowse Bioinformatics, June 15, 2009; 25(12): 1550 - 1551. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Ikeda, K. Tojo, Y. Inada, Y. Takada, M. Sakamoto, M. Lam, W. C Claycomb, and N. Tajima Regulation of urocortin I and its related peptide urocortin II by inflammatory and oxidative stresses in HL-1 cardiomyocytes J. Mol. Endocrinol., June 1, 2009; 42(6): 479 - 489. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Y. Tolstorukov, P. V. Kharchenko, J. A. Goldman, R. E. Kingston, and P. J. Park Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes Genome Res., June 1, 2009; 19(6): 967 - 977. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. A. Raker, A. A. Mironov, M. S. Gelfand, and D. D. Pervouchine Modulation of alternative splicing by long-range RNA structures in Drosophila Nucleic Acids Res., May 22, 2009; (2009) gkp407v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. C. Hannibal, E. K. Ruzzo, L. R. Miller, B. Betz, J. G. Buchan, D. M. Knutzen, K. Barnett, M. L. Landsverk, A. Brice, E. LeGuern, et al. SEPT9 gene sequencing analysis reveals recurrent mutations in hereditary neuralgic amyotrophy Neurology, May 19, 2009; 72(20): 1755 - 1759. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. E. Calvo, D. J. Pagliarini, and V. K. Mootha Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans PNAS, May 5, 2009; 106(18): 7507 - 7512. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 X. Hu, H. M. Stern, L. Ge, C. O'Brien, L. Haydu, C. D. Honchell, P. M. Haverty, B. A. Peters, T. D. Wu, L. C. Amler, et al. Genetic Alterations and Oncogenic Pathways Associated with Breast Cancer Subtypes Mol. Cancer Res., April 1, 2009; 7(4): 511 - 522. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Alizadeh, L. Z. Hong, C. B. Kaelin, T. Raudsepp, H. Manuel, and G. S. Barsh Genetics of Sex-linked yellow in the Syrian Hamster Genetics, April 1, 2009; 181(4): 1427 - 1436. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Necsulea, C. Guillet, J.-C. Cadoret, M.-N. Prioleau, and L. Duret The Relationship between DNA Replication and Human Genome Organization Mol. Biol. Evol., April 1, 2009; 26(4): 729 - 741. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Taher and I. Ovcharenko Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements Bioinformatics, March 1, 2009; 25(5): 578 - 584. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Matsumura, Z. Huang, T. Baba, P. S. Lee, J. C. Barnett, S. Mori, J. T. Chang, W.-L. Kuo, A. H. Gusberg, R. S. Whitaker, et al. Yin Yang 1 Modulates Taxane Response in Epithelial Ovarian Cancer Mol. Cancer Res., February 1, 2009; 7(2): 210 - 220. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Chen, T. Ara, and D. Gautheret Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation Mol. Biol. Evol., February 1, 2009; 26(2): 327 - 334. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Xie, P. Rigor, and P. Baldi MotifMap: a human genome-wide map of candidate regulatory motif sites Bioinformatics, January 15, 2009; 25(2): 167 - 174. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. M. Kuhn, D. Karolchik, A. S. Zweig, T. Wang, K. E. Smith, K. R. Rosenbloom, B. Rhead, B. J. Raney, A. Pohl, M. Pheasant, et al. The UCSC Genome Browser Database: update 2009 Nucleic Acids Res., January 1, 2009; 37(suppl_1): D755 - D761. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Axelrod, Y. Lin, P. C. Ng, T. B. Stockwell, J. Crabtree, J. Huang, E. Kirkness, R. L. Strausberg, M. E. Frazier, J. C. Venter, et al. The HuRef Browser: a web resource for individual human genomics Nucleic Acids Res., January 1, 2009; 37(suppl_1): D1018 - D1024. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Li, M. T. Lovci, Y.-S. Kwon, M. G. Rosenfeld, X.-D. Fu, and G. W. Yeo Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model PNAS, December 23, 2008; 105(51): 20179 - 20184. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Ponzielli, P. C. Boutros, S. Katz, A. Stojanova, A. P. Hanley, F. Khosravi, C. Bros, I. Jurisica, and L. Z. Penn Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies Nucleic Acids Res., December 1, 2008; 36(21): e144 - e144. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Rossi, O. N. Demidov, C. W. Anderson, E. Appella, and S. J. Mazur Induction of PPM1D following DNA-damaging treatments through a conserved p53 response element coincides with a shift in the use of transcription initiation sites Nucleic Acids Res., December 1, 2008; 36(22): 7168 - 7180. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. H. Perry, F. Yang, T. Marques-Bonet, C. Murphy, T. Fitzgerald, A. S. Lee, C. Hyland, A. C. Stone, M. E. Hurles, C. Tyler-Smith, et al. Copy number variation and evolution in humans and chimpanzees Genome Res., November 1, 2008; 18(11): 1698 - 1710. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. M. Kehoe, M. Oka, K. E. Hankowski, N. Reichert, S. Garcia, J. R. McCarrey, S. Gaubatz, and N. Terada A Conserved E2F6-Binding Element in Murine Meiosis-Specific Gene Promoters Biol Reprod, November 1, 2008; 79(5): 921 - 930. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. E. Babiarz, J. G. Ruby, Y. Wang, D. P. Bartel, and R. Blelloch Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs Genes & Dev., October 15, 2008; 22(20): 2773 - 2785. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. P. Bracken, P. A. Gregory, N. Kolesnikoff, A. G. Bert, J. Wang, M. F. Shannon, and G. J. Goodall A Double-Negative Feedback Loop between ZEB1-SIP1 and the microRNA-200 Family Regulates Epithelial-Mesenchymal Transition Cancer Res., October 1, 2008; 68(19): 7846 - 7854. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. M. Li, J. Wakefield, and S. Self A transdimensional Bayesian model for pattern recognition in DNA sequences Biostat., October 1, 2008; 9(4): 668 - 685. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. L. Organ, R. G. Moreno, and S. V. Edwards Three tiers of genome evolution in reptiles Integr. Comp. Biol., October 1, 2008; 48(4): 494 - 504. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. Baele, Y. Van de Peer, and S. Vansteelandt A Model-Based Approach to Study Nearest-Neighbor Influences Reveals Complex Substitution Patterns in Non-coding Sequences Syst Biol, October 1, 2008; 57(5): 675 - 692. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. K. Holloway, D. J. Begun, A. Siepel, and K. S. Pollard Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster Genome Res., October 1, 2008; 18(10): 1592 - 1601. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. J. Forman, A. Legesse-Miller, and H. A. Coller A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence PNAS, September 30, 2008; 105(39): 14879 - 14884. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. R. Kalari, T. L. Casavant, and T. E. Scheetz A knowledge-based approach to predict intragenic deletions or duplications Bioinformatics, September 15, 2008; 24(18): 1975 - 1979. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-T. Li, Y. Zhang, L. Kong, Q.-R. Liu, and L. Wei Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation Nucleic Acids Res., September 1, 2008; 36(15): 4833 - 4844. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. S.M. Smalley, M. Lioni, M. D. Palma, M. Xiao, B. Desai, S. Egyhazi, J. Hansson, H. Wu, A. J. King, P. Van Belle, et al. Increased cyclin D1 expression can mediate BRAF inhibitor resistance in BRAF V600E-mutated melanomas Mol. Cancer Ther., September 1, 2008; 7(9): 2876 - 2883. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q. Zhou, G. Zhang, Y. Zhang, S. Xu, R. Zhao, Z. Zhan, X. Li, Y. Ding, S. Yang, and W. Wang On the origin of new genes in Drosophila Genome Res., September 1, 2008; 18(9): 1446 - 1455. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Zhang and B. Su MicroRNA regulation and the variability of human cortical gene expression Nucleic Acids Res., August 1, 2008; 36(14): 4621 - 4628. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. S. Kim, T. Matsuda, and C. L. Cepko A Core Paired-Type and POU Homeodomain-Containing Transcription Factor Program Drives Retinal Bipolar Cell Gene Expression J. Neurosci., July 30, 2008; 28(31): 7748 - 7764. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. B. Conley, J. Piriyapongsa, and I. K. Jordan Retroviral promoters in the human genome Bioinformatics, July 15, 2008; 24(14): 1563 - 1567. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. T. Sullivan, C. B. Morehouse, NISC Comparative Sequencing Program, and J. W. Thomas Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design Nucleic Acids Res., July 1, 2008; 36(suppl_2): W149 - W153. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Kirkham, S. J. Nixon, M. T. Howes, L. Abi-Rached, D. E. Wakeham, M. Hanzal-Bayer, C. Ferguson, M. M. Hill, M. Fernandez-Rojo, D. A. Brown, et al. Evolutionary analysis and molecular dissection of caveola biogenesis J. Cell Sci., June 15, 2008; 121(12): 2075 - 2086. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. Cappelletti, M. Gariboldi, L. De Cecco, S. Toffanin, J. F Reid, L. Lusa, E. Bajetta, L. Celio, M. Greco, A. Fabbri, et al. Patterns and changes in gene expression following neo-adjuvant anti-estrogen treatment in estrogen receptor-positive breast cancer Endocr. Relat. Cancer, June 1, 2008; 15(2): 439 - 449. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Okada, C. Tashiro, K. Numata, K. Watanabe, H. Nakaoka, N. Yamamoto, K. Okubo, R. Ikeda, R. Saito, A. Kanai, et al. Comparative expression analysis uncovers novel features of endogenous antisense transcription Hum. Mol. Genet., June 1, 2008; 17(11): 1631 - 1640. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. A. Glazov, P. A. Cottee, W. C. Barris, R. J. Moore, B. P. Dalrymple, and M. L. Tizard A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach Genome Res., June 1, 2008; 18(6): 957 - 964. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Verma-Gaur, S. N. Rao, T. Taya, and P. Sadhale Genomewide Recruitment Analysis of Rpb4, a Subunit of Polymerase II in Saccharomyces cerevisiae, Reveals Its Involvement in Transcription Elongation Eukaryot. Cell, June 1, 2008; 7(6): 1009 - 1018. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Liang, Y.-S. Lin, and W.-H. Li Fast Evolution of Core Promoters in Primate Genomes Mol. Biol. Evol., June 1, 2008; 25(6): 1239 - 1244. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. A. Glazov, S. McWilliam, W. C. Barris, and B. P. Dalrymple Origin, Evolution, and Biological Role of miRNA Cluster in DLK-DIO3 Genomic Region in Placental Mammals Mol. Biol. Evol., May 1, 2008; 25(5): 939 - 948. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. C. Hodge, B. J. Quade, M. A. Rubin, E. A. Stewart, P. Dal Cin, and C. C. Morton Molecular and Cytogenetic Characterization of Plexiform Leiomyomata Provide Further Evidence for Genetic Heterogeneity Underlying Uterine Fibroids Am. J. Pathol., May 1, 2008; 172(5): 1403 - 1410. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Cohen, M. Shmoish, L. Levi, U. Cheruti, B. Levavi-Sivan, and E. Lubzens Alterations in Micro-Ribonucleic Acid Expression Profiles Reveal a Novel Pathway for Estrogen Regulation Endocrinology, April 1, 2008; 149(4): 1687 - 1696. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Shriner, T. M. Baye, M. A. Padilla, S. Zhang, L. K. Vaughan, and A. E. Loraine Commonality of functional annotation: a method for prioritization of candidate genes from genome-wide linkage studies Nucleic Acids Res., March 27, 2008; 36(4): e26 - e26. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Bethke, E. Webb, A. Murray, M. Schoemaker, C. Johansen, H. C. Christensen, K. Muir, P. McKinney, S. Hepworth, P. Dimitropoulou, et al. Comprehensive analysis of the role of DNA repair gene polymorphisms on risk of glioma Hum. Mol. Genet., March 15, 2008; 17(6): 800 - 805. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Ansong, S. O. Purvine, J. N. Adkins, M. S. Lipton, and R. D. Smith Proteogenomics: needs and roles to be filled by proteomics in genome annotation Brief Funct Genomic Proteomic, March 10, 2008; (2008) eln010v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Camp, A. De Jaco, L. Zhang, M. Marquez, B. De La Torre, and P. Taylor Acetylcholinesterase Expression in Muscle Is Specifically Controlled by a Promoter-Selective Enhancesome in the First Intron J. Neurosci., March 5, 2008; 28(10): 2459 - 2470. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Sinha, A. S. Adler, Y. Field, H. Y. Chang, and E. Segal Systematic functional characterization of cis-regulatory motifs in human core promoters Genome Res., March 1, 2008; 18(3): 477 - 488. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Astanehe, D. Arenillas, W. W. Wasserman, P. C. K. Leung, S. E. Dunn, B. R. Davies, G. B. Mills, and N. Auersperg Mechanisms underlying p53 regulation of PIK3CA transcription in ovarian surface epithelium and in ovarian cancer J. Cell Sci., March 1, 2008; 121(5): 664 - 674. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Bethke, A. Murray, E. Webb, M. Schoemaker, K. Muir, P. McKinney, S. Hepworth, P. Dimitropoulou, A. Lophatananon, M. Feychting, et al. Comprehensive Analysis of DNA Repair Gene Variants and Risk of Meningioma J Natl Cancer Inst, February 20, 2008; 100(4): 270 - 276. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Zhao, T. Gu, H. C. Rice, K. L. McAdams, K. M. Roark, K. Lawson, S. A. Gauthier, K. L. Reagan, and R. S. Hewes A Drosophila Gain-of-Function Screen for Candidate Genes Involved in Steroid-Dependent Neuroendocrine Cell Remodeling Genetics, February 1, 2008; 178(2): 883 - 901. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. S. Hughes, C. O. Buckley, and D. E. Neafsey Complex Selection on Intron Size in Cryptococcus neoformans Mol. Biol. Evol., February 1, 2008; 25(2): 247 - 253. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. G. Jegga, A. Inga, D. Menendez, B. J. Aronow, and M. A. Resnick Functional evolution of the p53 regulatory network through its target response elements PNAS, January 22, 2008; 105(3): 944 - 949. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Bourdeau, J. Deschenes, D. Laperriere, M. Aid, J. H. White, and S. Mader Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells Nucleic Acids Res., January 17, 2008; 36(1): 76 - 93. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Bao, M. Zhou, and Y. Cui CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators Nucleic Acids Res., January 11, 2008; 36(suppl_1): D83 - D87. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Singh, A. Olowoyeye, P. H. Baenziger, J. Dantzer, M. G. Kann, P. Radivojac, R. Heiland, and S. D. Mooney MutDB: update on development of tools for the biochemical analysis of genetic variation Nucleic Acids Res., January 11, 2008; 36(suppl_1): D815 - D819. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. C. Frith, E. Valen, A. Krogh, Y. Hayashizaki, P. Carninci, and A. Sandelin A code for transcription initiation in mammalian genomes Genome Res., January 1, 2008; 18(1): 1 - 12. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Abrusan, H.-J. Krambeck, T. Junier, J. Giordano, and P. E. Warburton Biased Distributions and Decay of Long Interspersed Nuclear Elements in the Chicken Genome Genetics, January 1, 2008; 178(1): 573 - 581. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. J. de Smith, A. Tsalenko, N. Sampas, A. Scheffer, N. A. Yamada, P. Tsang, A. Ben-Dor, Z. Yakhini, R. J. Ellis, L. Bruhn, et al. Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases Hum. Mol. Genet., December 1, 2007; 16(23): 2783 - 2794. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Ro, R. Song, C. Park, H. Zheng, K. M. Sanders, and W. Yan Cloning and expression profiling of small RNAs expressed in the mouse ovary RNA, December 1, 2007; 13(12): 2366 - 2380. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. J. Martin, H. Chen, X. Liao, H. Allayee, D. M. Shih, G. S. Lee, D. N. Hovland Jr, W. A. Robbins, K. Carnes, R. A. Hess, et al. FK506, a Calcineurin Inhibitor, Prevents Cadmium-Induced Testicular Toxicity in Mice Toxicol. Sci., December 1, 2007; 100(2): 474 - 485. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. G. Ruby, A. Stark, W. K. Johnston, M. Kellis, D. P. Bartel, and E. C. Lai Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs Genome Res., December 1, 2007; 17(12): 1850 - 1864. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. P. Luedi, F. S. Dietrich, J. R. Weidman, J. M. Bosko, R. L. Jirtle, and A. J. Hartemink Computational and experimental identification of novel human imprinted genes Genome Res., December 1, 2007; 17(12): 1723 - 1730. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. A. Huntley and A. G. Clark Evolutionary Analysis of Amino Acid Repeats across the Genomes of 12 Drosophila Species Mol. Biol. Evol., December 1, 2007; 24(12): 2598 - 2609. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Coulombe-Huntington and J. Majewski Intron Loss and Gain in Drosophila Mol. Biol. Evol., December 1, 2007; 24(12): 2842 - 2850. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Caspi, B. Williams, J. Kim-Cohen, I. W. Craig, B. J. Milne, R. Poulton, L. C. Schalkwyk, A. Taylor, H. Werts, and T. E. Moffitt Moderation of breastfeeding effects on the IQ by genetic variation in fatty acid metabolism PNAS, November 20, 2007; 104(47): 18860 - 18865. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Xiao, Z. Wang, M. Jang, and C. B. Burge Coevolutionary networks of splicing cis-regulatory elements PNAS, November 20, 2007; 104(47): 18583 - 18588. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. K. Saini, S. Griffiths-Jones, and A. J. Enright Genomic analysis of human microRNA transcripts PNAS, November 6, 2007; 104(45): 17719 - 17724. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Chakrabarti, M. Pearson, L. Grate, T. Sterne-Weiler, J. Deans, J. P. Donohue, and M. Ares Jr Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis RNA, November 1, 2007; 13(11): 1923 - 1939. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. D. Moffat, P. C. Boutros, T. Celius, J. Linden, R. Pohjanvirta, and A. B. Okey microRNAs in Adult Rodent Liver Are Refractory to Dioxin Treatment Toxicol. Sci., October 1, 2007; 99(2): 470 - 487. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. R. Dreszer, G. D. Wall, D. Haussler, and K. S. Pollard Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion Genome Res., October 1, 2007; 17(10): 1420 - 1430. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Ro, C. Park, D. Young, K. M. Sanders, and W. Yan Tissue-dependent paired expression of miRNAs Nucleic Acids Res., September 27, 2007; 35(17): 5944 - 5953. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Kim and C. Lee QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments Bioinformatics, September 1, 2007; 23(17): 2331 - 2333. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Sonoda, J. Laganiere, I. R. Mehl, G. D. Barish, L.-W. Chong, X. Li, I. E. Scheffler, D. C. Mock, A. R. Bataille, F. Robert, et al. Nuclear receptor ERR{alpha} and coactivator PGC-1beta are effectors of IFN-{gamma}-induced host defense Genes & Dev., August 1, 2007; 21(15): 1909 - 1920. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Takaoka, M. Ohta, A. Ito, K. Takamatsu, A. Sugano, K. Funakoshi, N. Takaoka, N. Sato, H. Yokozaki, N. Arizono, et al. Electroacupuncture suppresses myostatin gene expression: cell proliferative reaction in mouse skeletal muscle Physiol Genomics, July 18, 2007; 30(2): 102 - 110. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Bhasi, R. V. Pandey, S. P. Utharasamy, and P. Senapathy EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes Bioinformatics, July 15, 2007; 23(14): 1815 - 1823. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Reimand, M. Kull, H. Peterson, J. Hansen, and J. Vilo g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments Nucleic Acids Res., July 13, 2007; 35(suppl_2): W193 - W200. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. A.J.M. van den Hurk, I. C. Meij, M. del Carmen Seleme, H. Kano, K. Nikopoulos, L. H. Hoefsloot, E. A. Sistermans, I. J. de Wijs, A. Mukhopadhyay, A. S. Plomp, et al. L1 retrotransposition can occur early in human embryonic development Hum. Mol. Genet., July 1, 2007; 16(13): 1587 - 1592. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Gao, C. De Geyter, K. Kossowska, and H. Zhang FSH stimulates the expression of the ADAMTS-16 protease in mature human ovarian follicles Mol. Hum. Reprod., July 1, 2007; 13(7): 465 - 471. [Abstract] [Full Text] [PDF]
|
|