Nucleic Acids Research, 2003, Vol. 31, No. 13 3320-3323
© 2003 Oxford University Press
ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins
Laboratoire de BioCristallographie, IBCP-CNRS UMR 5086 UCBL, 7 passage du Vercors, 69367 Lyon Cedex 07, France 1 Laboratoire de Biologie Moléculaire et des Relations Plantes Microorganismes, BP 27 Chemin de Borde Rouge, 31326 Castanet Tolosan, France
*To whom correspondence should be addressed. Tel: +33 472722624; Fax: +33 472722616; Email: p.gouet{at}ibcp.fr
The fortran program ESPript was created in 1993, to display on a PostScript figure multiple sequence alignments adorned with secondary structure elements. A web server was made available in 1999 and ESPript has been linked to three major web tools: ProDom which identifies protein domains, PredictProtein which predicts secondary structure elements and NPS@ which runs sequence alignment programs. A web server named ENDscript was created in 2002 to facilitate the generation of ESPript figures containing a large amount of information. ENDscript uses programs such as BLAST, Clustal and PHYLODENDRON to work on protein sequences and such as DSSP, CNS and MOLSCRIPT to work on protein coordinates. It enables the creation, from a single Protein Data Bank identifier, of a multiple sequence alignment figure adorned with secondary structure elements of each sequence of known 3D structure. Similar 3D structures are superimposed in turn with the program PROFIT and a final figure is drawn with BOBSCRIPT, which shows sequence and structure conservation along the C
trace of the query. ESPript and ENDscript are available at http://genopole.toulouse.inra.fr/ESPript.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  K. Sakamoto, Y. Agari, K. Agari, S. Kuramitsu, and A. Shinkai Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8 Microbiology, July 1, 2010; 156(7): 1993 - 2005. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Cappadocia, A. Marechal, J.-S. Parent, E. Lepage, J. Sygusch, and N. Brisson Crystal Structures of DNA-Whirly Complexes and Their Role in Arabidopsis Organelle Genome Repair PLANT CELL, June 1, 2010; 22(6): 1849 - 1867. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Seveno, E. Seveno-Carpentier, A. Voxeur, L. Menu-Bouaouiche, C. Rihouey, F. Delmas, C. Chevalier, A. Driouich, and P. Lerouge Characterization of a putative 3-deoxy-D-manno-2-octulosonic acid (Kdo) transferase gene from Arabidopsis thaliana Glycobiology, May 1, 2010; 20(5): 617 - 628. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. Yi, D. T. Nguyen, A. Higa-Nishiyama, P. Auguste, M. Bouchecareilh, M. Dominguez, R. Bielmann, S. Palcy, J. F. Liu, and E. Chevet MAPK scaffolding by BIT1 in the Golgi complex modulates stress resistance J. Cell Sci., April 1, 2010; 123(7): 1060 - 1072. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. A. Dames Structural Basis for the Association of the Redox-sensitive Target of Rapamycin FATC Domain with Membrane-mimetic Micelles J. Biol. Chem., March 5, 2010; 285(10): 7766 - 7775. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 F. Coulibaly, C. Chevalier, B. Delmas, and F. A. Rey Crystal Structure of an Aquabirnavirus Particle: Insights into Antigenic Diversity and Virulence Determinism J. Virol., February 15, 2010; 84(4): 1792 - 1799. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y.-X. He, L. Huang, Y. Xue, X. Fei, Y.-B. Teng, S. B. Rubin-Pitel, H. Zhao, and C.-Z. Zhou Crystal Structure and Computational Analyses Provide Insights into the Catalytic Mechanism of 2,4-Diacetylphloroglucinol Hydrolase PhlG from Pseudomonas fluorescens J. Biol. Chem., February 12, 2010; 285(7): 4603 - 4611. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Obiero, V. Pittet, S. A. Bonderoff, and D. A. R. Sanders Thioredoxin System from Deinococcus radiodurans J. Bacteriol., January 15, 2010; 192(2): 494 - 501. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C.-C. Lo, C. A. Bonner, G. Xie, M. D'Souza, and R. A. Jensen Cohesion Group Approach for Evolutionary Analysis of Aspartokinase, an Enzyme That Feeds a Branched Network of Many Biochemical Pathways Microbiol. Mol. Biol. Rev., December 1, 2009; 73(4): 594 - 651. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Lee, J. Johnson, Z. Ding, M. Paetzel, and R. B. Cornell Crystal Structure of a Mammalian CTP: Phosphocholine Cytidylyltransferase Catalytic Domain Reveals Novel Active Site Residues within a Highly Conserved Nucleotidyltransferase Fold J. Biol. Chem., November 27, 2009; 284(48): 33535 - 33548. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Golovenko, E. Manakova, G. Tamulaitiene, S. Grazulis, and V. Siksnys Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII Nucleic Acids Res., October 6, 2009; (2009) gkp699v2. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. P. Tchesnokov, A. Obikhod, R. F. Schinazi, and M. Gotte Engineering of a Chimeric RB69 DNA Polymerase Sensitive to Drugs Targeting the Cytomegalovirus Enzyme J. Biol. Chem., September 25, 2009; 284(39): 26439 - 26446. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. V. Korotkov, M. D. Gray, A. Kreger, S. Turley, M. Sandkvist, and W. G. J. Hol Calcium Is Essential for the Major Pseudopilin in the Type 2 Secretion System J. Biol. Chem., September 18, 2009; 284(38): 25466 - 25470. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Wang, K. Natarajan, and D. H. Margulies Structural Basis of the CD8{alpha}{beta}/MHC Class I Interaction: Focused Recognition Orients CD8{beta} to a T Cell Proximal Position J. Immunol., August 15, 2009; 183(4): 2554 - 2564. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Michel, T. Barbeyron, B. Kloareg, and M. Czjzek The family 6 carbohydrate-binding modules have coevolved with their appended catalytic modules toward similar substrate specificity Glycobiology, June 1, 2009; 19(6): 615 - 623. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Ito, M. Watanabe-Matsui, K. Igarashi, and K. Murayama Crystal structure of the Bach1 BTB domain and its regulation of homodimerization. Genes Cells, February 1, 2009; 14(2): 167 - 178. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. J Kojetin, T. P Burris, E. V Jensen, and S. A Khan Implications of the binding of tamoxifen to the coactivator recognition site of the estrogen receptor Endocr. Relat. Cancer, December 1, 2008; 15(4): 851 - 870. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Zhang, J. Ju, H. Peng, F. Gao, C. Zhou, Y. Zeng, Y. Xue, Y. Li, B. Henrissat, G. F. Gao, et al. Biochemical and Structural Characterization of the Intracellular Mannanase AaManA of Alicyclobacillus acidocaldarius Reveals a Novel Glycoside Hydrolase Family Belonging to Clan GH-A J. Biol. Chem., November 14, 2008; 283(46): 31551 - 31558. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Gruez, B. Selisko, M. Roberts, G. Bricogne, C. Bussetta, I. Jabafi, B. Coutard, A. M. De Palma, J. Neyts, and B. Canard The Crystal Structure of Coxsackievirus B3 RNA-Dependent RNA Polymerase in Complex with Its Protein Primer VPg Confirms the Existence of a Second VPg Binding Site on Picornaviridae Polymerases J. Virol., October 1, 2008; 82(19): 9577 - 9590. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. A. Dames, E. Bang, D. Haussinger, T. Ahrens, J. Engel, and S. Grzesiek Insights into the Low Adhesive Capacity of Human T-cadherin from the NMR Structure of Its N-terminal Extracellular Domain J. Biol. Chem., August 22, 2008; 283(34): 23485 - 23495. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Creze, S. Castang, E. Derivery, R. Haser, N. Hugouvieux-Cotte-Pattat, V. E. Shevchik, and P. Gouet The Crystal Structure of Pectate Lyase PelI from Soft Rot Pathogen Erwinia chrysanthemi in Complex with Its Substrate J. Biol. Chem., June 27, 2008; 283(26): 18260 - 18268. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Bashiri, C. J. Squire, N. J. Moreland, and E. N. Baker Crystal Structures of F420-dependent Glucose-6-phosphate Dehydrogenase FGD1 Involved in the Activation of the Anti-tuberculosis Drug Candidate PA-824 Reveal the Basis of Coenzyme and Substrate Binding J. Biol. Chem., June 20, 2008; 283(25): 17531 - 17541. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. D. Schrag, S. Jiralerspong, M. Banville, M. L. Jaramillo, and M. D. O'Connor-McCourt The crystal structure and dimerization interface of GADD45{gamma} PNAS, May 6, 2008; 105(18): 6566 - 6571. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Ravaud, G. Stjepanovic, K. Wild, and I. Sinning The Crystal Structure of the Periplasmic Domain of the Escherichia coli Membrane Protein Insertase YidC Contains a Substrate Binding Cleft J. Biol. Chem., April 4, 2008; 283(14): 9350 - 9358. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Schoehn, M. El Bakkouri, C. M. S. Fabry, O. Billet, L. F. Estrozi, L. Le, D. T. Curiel, A. V. Kajava, R. W. H. Ruigrok, and E. J. Kremer Three-Dimensional Structure of Canine Adenovirus Serotype 2 Capsid J. Virol., April 1, 2008; 82(7): 3192 - 3203. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. C. Mortimer, A. Laohavisit, N. Macpherson, A. Webb, C. Brownlee, N. H. Battey, and J. M. Davies Annexins: multifunctional components of growth and adaptation J. Exp. Bot., February 10, 2008; (2008) erm344v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. W. Abbott, J. M. Eirin-Lopez, and A. B. Boraston Insight into Ligand Diversity and Novel Biological Roles for Family 32 Carbohydrate-Binding Modules Mol. Biol. Evol., January 1, 2008; 25(1): 155 - 167. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Parrish and B. Moss Characterization of a Second Vaccinia Virus mRNA-Decapping Enzyme Conserved in Poxviruses J. Virol., December 1, 2007; 81(23): 12973 - 12978. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Fort, L. R. de la Ballina, H. E. Burghardt, C. Ferrer-Costa, J. Turnay, C. Ferrer-Orta, I. Uson, A. Zorzano, J. Fernandez-Recio, M. Orozco, et al. The Structure of Human 4F2hc Ectodomain Provides a Model for Homodimerization and Electrostatic Interaction with Plasma Membrane J. Biol. Chem., October 26, 2007; 282(43): 31444 - 31452. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. P. Bussink, D. Speijer, J. M. F. G. Aerts, and R. G. Boot Evolution of Mammalian Chitinase(-Like) Members of Family 18 Glycosyl Hydrolases Genetics, October 1, 2007; 177(2): 959 - 970. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Ravaud, X. Robert, H. Watzlawick, R. Haser, R. Mattes, and N. Aghajari Trehalulose Synthase Native and Carbohydrate Complexed Structures Provide Insights into Sucrose Isomerization J. Biol. Chem., September 21, 2007; 282(38): 28126 - 28136. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Beerens, B. Selisko, S. Ricagno, I. Imbert, L. van der Zanden, E. J. Snijder, and B. Canard De Novo Initiation of RNA Synthesis by the Arterivirus RNA-Dependent RNA Polymerase J. Virol., August 15, 2007; 81(16): 8384 - 8395. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Flament, T. Barbeyron, M. Jam, P. Potin, M. Czjzek, B. Kloareg, and G. Michel Alpha-Agarases Define a New Family of Glycoside Hydrolases, Distinct from Beta-Agarase Families Appl. Envir. Microbiol., July 15, 2007; 73(14): 4691 - 4694. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. H. G. Baxter, C.-I Chang, Y. Chelliah, S. Blandin, E. A. Levashina, and J. Deisenhofer Structural basis for conserved complement factor-like function in the antimalarial protein TEP1 PNAS, July 10, 2007; 104(28): 11615 - 11620. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. R. M. Ojala, T. Pikkarainen, A. Tuuttila, T. Sandalova, and K. Tryggvason Crystal Structure of the Cysteine-rich Domain of Scavenger Receptor MARCO Reveals the Presence of a Basic and an Acidic Cluster That Both Contribute to Ligand Recognition J. Biol. Chem., June 1, 2007; 282(22): 16654 - 16666. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. M. Sanders, D. Sizov, P. R. Seavers, M. Ortiz-Lombardia, and A. A. Antson Transcription activator structure reveals redox control of a replication initiation reaction Nucleic Acids Res., May 11, 2007; 35(10): 3504 - 3515. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Rhimi, M. Juy, N. Aghajari, R. Haser, and S. Bejar Probing the Essential Catalytic Residues and Substrate Affinity in the Thermoactive Bacillus stearothermophilus US100 L-Arabinose Isomerase by Site-Directed Mutagenesis J. Bacteriol., May 1, 2007; 189(9): 3556 - 3563. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Medlock, L. Swartz, T. A. Dailey, H. A. Dailey, and W. N. Lanzilotta Substrate interactions with human ferrochelatase PNAS, February 6, 2007; 104(6): 1789 - 1793. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Chu, Z. Lou, Y. W. Chen, Y. Liu, B. Gao, L. Zong, A. H. Khan, J. I. Bell, Z. Rao, and G. F. Gao First Glimpse of the Peptide Presentation by Rhesus Macaque MHC Class I: Crystal Structures of Mamu-A*01 Complexed with Two Immunogenic SIV Epitopes and Insights into CTL Escape J. Immunol., January 15, 2007; 178(2): 944 - 952. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Cherepanov LEDGF/p75 interacts with divergent lentiviral integrases and modulates their enzymatic activity in vitro Nucleic Acids Res., January 12, 2007; 35(1): 113 - 124. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Hartlieb, T. Muziol, W. Weissenhorn, and S. Becker Crystal structure of the C-terminal domain of Ebola virus VP30 reveals a role in transcription and nucleocapsid association PNAS, January 9, 2007; 104(2): 624 - 629. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Blankenfeldt, N. H. Thoma, J. S. Wray, M. Gautel, and I. Schlichting Crystal structures of human cardiac beta-myosin II S2-{Delta} provide insight into the functional role of the S2 subfragment PNAS, November 21, 2006; 103(47): 17713 - 17717. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. B. Boraston, D. Wang, and R. D. Burke Blood Group Antigen Recognition by a Streptococcus pneumoniae Virulence Factor J. Biol. Chem., November 17, 2006; 281(46): 35263 - 35271. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Colin, E. Deniaud, M. Jam, V. Descamps, Y. Chevolot, N. Kervarec, J.-C. Yvin, T. Barbeyron, G. Michel, and B. Kloareg Cloning and biochemical characterization of the fucanase FcnA: definition of a novel glycoside hydrolase family specific for sulfated fucans Glycobiology, November 1, 2006; 16(11): 1021 - 1032. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Normand, R. Capeyrou, S. Quevillon-Cheruel, A. Mougin, Y. Henry, and M. Caizergues-Ferrer Analysis of the binding of the N-terminal conserved domain of yeast Cbf5p to a box H/ACA snoRNA RNA, October 1, 2006; 12(10): 1868 - 1882. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Chattopadhyay, S. Bhatia, A. Fiser, S. C. Almo, and S. G. Nathenson Structural Basis of Inducible Costimulator Ligand Costimulatory Function: Determination of the Cell Surface Oligomeric State and Functional Mapping of the Receptor Binding Site of the Protein J. Immunol., September 15, 2006; 177(6): 3920 - 3929. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. J. Harrison, M. Yu, T. Gardenborg, M. Middleditch, R. J. Ramsay, E. N. Baker, and J. S. Lott The Structure of MbtI from Mycobacterium tuberculosis, the First Enzyme in the Biosynthesis of the Siderophore Mycobactin, Reveals It To Be a Salicylate Synthase J. Bacteriol., September 1, 2006; 188(17): 6081 - 6091. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Carre-Mlouka, A. Mejean, P. Quillardet, H. Ashida, Y. Saito, A. Yokota, I. Callebaut, A. Sekowska, E. Dittmann, C. Bouchier, et al. A New Rubisco-like Protein Coexists with a Photosynthetic Rubisco in the Planktonic Cyanobacteria Microcystis J. Biol. Chem., August 25, 2006; 281(34): 24462 - 24471. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Su, Z. Lou, F. Sun, Y. Zhai, H. Yang, R. Zhang, A. Joachimiak, X. C. Zhang, M. Bartlam, and Z. Rao Dodecamer Structure of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein nsp10 J. Virol., August 15, 2006; 80(16): 7902 - 7908. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Xu, Y. Zhai, F. Sun, Z. Lou, D. Su, Y. Xu, R. Zhang, A. Joachimiak, X. C. Zhang, M. Bartlam, et al. New Antiviral Target Revealed by the Hexameric Structure of Mouse Hepatitis Virus Nonstructural Protein nsp15 J. Virol., August 15, 2006; 80(16): 7909 - 7917. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Magnusdottir, P. Stenmark, S. Flodin, T. Nyman, M. Hammarstrom, M. Ehn, M A. Bakali H, H. Berglund, and P. Nordlund The Crystal Structure of a Human PP2A Phosphatase Activator Reveals a Novel Fold and Highly Conserved Cleft Implicated in Protein-Protein Interactions J. Biol. Chem., August 11, 2006; 281(32): 22434 - 22438. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. S. Lott, B. Paget, J. M. Johnston, L. T. J. Delbaere, J. A. Sigrell-Simon, M. J. Banfield, and E. N. Baker The Structure of an Ancient Conserved Domain Establishes a Structural Basis for Stable Histidine Phosphorylation and Identifies a New Family of Adenosine-specific Kinases J. Biol. Chem., August 4, 2006; 281(31): 22131 - 22141. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. A. Appleton, Y. Zhang, P. Wu, J. P. Yin, W. Hunziker, N. J. Skelton, S. S. Sidhu, and C. Wiesmann Comparative Structural Analysis of the Erbin PDZ Domain and the First PDZ Domain of ZO-1: INSIGHTS INTO DETERMINANTS OF PDZ DOMAIN SPECIFICITY J. Biol. Chem., August 4, 2006; 281(31): 22312 - 22320. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M.-N. Hung, E. Rangarajan, C. Munger, G. Nadeau, T. Sulea, and A. Matte Crystal Structure of TDP-Fucosamine Acetyltransferase (WecD) from Escherichia coli, an Enzyme Required for Enterobacterial Common Antigen Synthesis J. Bacteriol., August 1, 2006; 188(15): 5606 - 5617. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I-M. Yu, M. L. Oldham, J. Zhang, and J. Chen Crystal Structure of the Severe Acute Respiratory Syndrome (SARS) Coronavirus Nucleocapsid Protein Dimerization Domain Reveals Evolutionary Linkage between Corona- and Arteriviridae J. Biol. Chem., June 23, 2006; 281(25): 17134 - 17139. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-K. Rhee, D.-Y. Kim, D.-G. Ahn, J.-H. Yun, S.-H. Jang, H.-C. Shin, H.-S. Cho, J.-G. Pan, and J.-W. Oh Analysis of the Thermostability Determinants of Hyperthermophilic Esterase EstE1 Based on Its Predicted Three-Dimensional Structure Appl. Envir. Microbiol., April 1, 2006; 72(4): 3021 - 3025. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 W. I.L. Tameling, J. H. Vossen, M. Albrecht, T. Lengauer, J. A. Berden, M. A. Haring, B. J.C. Cornelissen, and F. L.W. Takken Mutations in the NB-ARC Domain of I-2 That Impair ATP Hydrolysis Cause Autoactivation Plant Physiology, April 1, 2006; 140(4): 1233 - 1245. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. R. Rajashankar, R. Bryk, R. Kniewel, J. A. Buglino, C. F. Nathan, and C. D. Lima Crystal Structure and Functional Analysis of Lipoamide Dehydrogenase from Mycobacterium tuberculosis J. Biol. Chem., October 7, 2005; 280(40): 33977 - 33983. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. A. Dames, J. M. Mulet, K. Rathgeb-Szabo, M. N. Hall, and S. Grzesiek The Solution Structure of the FATC Domain of the Protein Kinase Target of Rapamycin Suggests a Role for Redox-dependent Structural and Cellular Stability J. Biol. Chem., May 27, 2005; 280(21): 20558 - 20564. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Kuratani, R. Ishii, Y. Bessho, R. Fukunaga, T. Sengoku, M. Shirouzu, S.-i. Sekine, and S. Yokoyama Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus J. Biol. Chem., April 22, 2005; 280(16): 16002 - 16008. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Macheboeuf, A. M. Di Guilmi, V. Job, T. Vernet, O. Dideberg, and A. Dessen Active site restructuring regulates ligand recognition in class A penicillin-binding proteins PNAS, January 18, 2005; 102(3): 577 - 582. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Bru, E. Courcelle, S. Carrere, Y. Beausse, S. Dalmar, and D. Kahn The ProDom database of protein domain families: more emphasis on 3D Nucleic Acids Res., January 1, 2005; 33(suppl_1): D212 - D215. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. V. Lunin, Y. Li, J. D. Schrag, P. Iannuzzi, M. Cygler, and A. Matte Crystal Structures of Escherichia coli ATP-Dependent Glucokinase and Its Complex with Glucose J. Bacteriol., October 15, 2004; 186(20): 6915 - 6927. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Bumann, S. Djafarzadeh, A. E. Oberholzer, P. Bigler, M. Altmann, H. Trachsel, and U. Baumann Crystal Structure of Yeast Ypr118w, a Methylthioribose-1-phosphate Isomerase Related to Regulatory eIF2B Subunits J. Biol. Chem., August 27, 2004; 279(35): 37087 - 37094. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Nicolet and C. L. Drennan AdoMet radical proteins--from structure to evolution--alignment of divergent protein sequences reveals strong secondary structure element conservation Nucleic Acids Res., August 2, 2004; 32(13): 4015 - 4025. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Michel, K. Pojasek, Y. Li, T. Sulea, R. J. Linhardt, R. Raman, V. Prabhakar, R. Sasisekharan, and M. Cygler The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-dependent Catalytic Machinery J. Biol. Chem., July 30, 2004; 279(31): 32882 - 32896. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. Poirot, K. Suhre, C. Abergel, E. O'Toole, and C. Notredame 3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment Nucleic Acids Res., July 1, 2004; 32(suppl_2): W37 - W40. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Garcia-Castellanos, G. Mallorqui-Fernandez, A. Marrero, J. Potempa, M. Coll, and F. X. Gomis-Ruth On the Transcriptional Regulation of Methicillin Resistance: MecI REPRESSOR IN COMPLEX WITH ITS OPERATOR J. Biol. Chem., April 23, 2004; 279(17): 17888 - 17896. [Abstract] [Full Text] [PDF]
|
|