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Nucleic Acids Research, 2003, Vol. 31, No. 13 3736-3737
© 2003 Oxford University Press

Bioverse: functional, structural and contextual annotation of proteins and proteomes

Jason McDermott and Ram Samudrala*

Computational Genomics Group, Department of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA

*To whom correspondence should be addressed. Tel: 1 2067326122; Fax: 1 2067326055; Email: ram{at}compbio.washington.edu

Functional annotation is routinely performed for large-scale genomics projects and databases. Researchers working on more specific problems, for instance on an individual pathway or complex, also need to be able to quickly, completely and accurately annotate sequences. The Bioverse sequence annotation server (http://bioverse.compbio.washington.edu) provides a web-based interface to allow users to submit protein sequences to the Bioverse framework. Sequences are functionally and structurally annotated and potential contextual annotations are provided. Researchers can also submit candidate genomes for annotation of all proteins encoded by the genome (proteome).


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