Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (226K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (10)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by McDermott, J.
Right arrow Articles by Samudrala, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by McDermott, J.
Right arrow Articles by Samudrala, R.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2003, Vol. 31, No. 13 3736-3737
© 2003 Oxford University Press

Bioverse: functional, structural and contextual annotation of proteins and proteomes

Jason McDermott and Ram Samudrala*

Computational Genomics Group, Department of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA

*To whom correspondence should be addressed. Tel: 1 2067326122; Fax: 1 2067326055; Email: ram{at}compbio.washington.edu

Functional annotation is routinely performed for large-scale genomics projects and databases. Researchers working on more specific problems, for instance on an individual pathway or complex, also need to be able to quickly, completely and accurately annotate sequences. The Bioverse sequence annotation server (http://bioverse.compbio.washington.edu) provides a web-based interface to allow users to submit protein sequences to the Bioverse framework. Sequences are functionally and structurally annotated and potential contextual annotations are provided. Researchers can also submit candidate genomes for annotation of all proteins encoded by the genome (proteome).


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Genome ResHome page
T. Itoh, T. Tanaka, R. A. Barrero, C. Yamasaki, Y. Fujii, P. B. Hilton, B. A. Antonio, H. Aono, R. Apweiler, R. Bruskiewich, et al.
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
Genome Res., February 1, 2007; 17(2): 175 - 183.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
N. Massjouni, C. G. Rivera, and T. M. Murali
VIRGO: computational prediction of gene functions.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W340 - W344.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
W. Wang, H. Zheng, S. Yang, H. Yu, J. Li, H. Jiang, J. Su, L. Yang, J. Zhang, J. McDermott, et al.
Origin and evolution of new exons in rodents
Genome Res., September 1, 2005; 15(9): 1258 - 1264.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
J. McDermott, R. Bumgarner, and R. Samudrala
Functional annotation from predicted protein interaction networks
Bioinformatics, August 1, 2005; 21(15): 3217 - 3226.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
L.-H. Hung, S.-C. Ngan, T. Liu, and R. Samudrala
PROTINFO: new algorithms for enhanced protein structure predictions
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W77 - W80.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. McDermott, M. Guerquin, Z. Frazier, A. N. Chang, and R. Samudrala
BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W324 - W325.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
A. N. Chang, J. McDermott, and R. Samudrala
An enhanced Java graph applet interface for visualizing interactomes
Bioinformatics, April 15, 2005; 21(8): 1741 - 1742.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.