Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (513K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (4)
Right arrowRequest Permissions
Citing Articles
Right arrowScopus Links
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Ramu, C.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Ramu, C.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2003, Vol. 31, No. 13 3771-3774
© 2003 Oxford University Press

SIRW: a web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches

Chenna Ramu*

European Molecular Biology Laboratory, Postfach 10.2209, 69012 Heidelberg, Germany

*Tel: +49 6221387530; Fax: +49 6221387517; Email: chenna{at}embl.de

SIRW (http://sirw.embl.de/) is a World Wide Web interface to the Simple Indexing and Retrieval System (SIR) that is capable of parsing and indexing various flat file databases. In addition it provides a framework for doing sequence analysis (e.g. motif pattern searches) for selected biological sequences through keyword search. SIRW is an ideal tool for the bioinformatics community for searching as well as analyzing biological sequences of interest.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
Nucleic Acids ResHome page
C. M. Gould, F. Diella, A. Via, P. Puntervoll, C. Gemund, S. Chabanis-Davidson, S. Michael, A. Sayadi, J. C. Bryne, C. Chica, et al.
ELM: the status of the 2010 eukaryotic linear motif resource
Nucleic Acids Res., January 1, 2010; 38(suppl_1): D167 - D180.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
L. Corsini, M. Hothorn, G. Stier, V. Rybin, K. Scheffzek, T. J. Gibson, and M. Sattler
Dimerization and Protein Binding Specificity of the U2AF Homology Motif of the Splicing Factor Puf60
J. Biol. Chem., January 2, 2009; 284(1): 630 - 639.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
F. Diella, S. Chabanis, K. Luck, C. Chica, C. Ramu, C. Nerlov, and T. J. Gibson
KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors
Bioinformatics, January 1, 2009; 25(1): 1 - 5.
[Abstract] [Full Text] [PDF]


Home page
J. Virol.Home page
T. Sheahan, B. Rockx, E. Donaldson, A. Sims, R. Pickles, D. Corti, and R. Baric
Mechanisms of Zoonotic Severe Acute Respiratory Syndrome Coronavirus Host Range Expansion in Human Airway Epithelium
J. Virol., March 1, 2008; 82(5): 2274 - 2285.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
S. Michael, G. Trave, C. Ramu, C. Chica, and T. J. Gibson
Discovery of candidate KEN-box motifs using Cell Cycle keyword enrichment combined with native disorder prediction and motif conservation
Bioinformatics, February 15, 2008; 24(4): 453 - 457.
[Abstract] [Full Text] [PDF]



Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.