Nucleic Acids Research, 2003, Vol. 31, No. 3 799-804
© 2003 Oxford University Press
The pre-ribosomal network
Laboratoire de Biologie Moleculaire Eucaryote, F-32062 Toulouse, France and 1 Biochemie-Zentrum Heidelberg, Im Neuenheimer Feld 328, D-69120 Heidelberg, Germany
*To whom correspondence should be addressed. Tel: +49 6221 544149; Fax: +49 6221 544366; Email: im4{at}ix.urz.uni-heidelberg.de
Recent achievements in yeast functional proteomics have significantly advanced our knowledge about ribosome biogenesis. Here, we present a program developed to integrate data from various proteome analyses with cell biological data on components present in the ribosome producing factories. This program allows users to attribute factors to certain complexes and to specific steps of ribosome biogenesis. Thus, it helps to gain novel insights into the complex network involved in maturation of ribosomal subunits. The database can be accessed at the URL http://www.pre-ribosome.de.
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
S. Kundu-Michalik, M.-A. Bisotti, E. Lipsius, A. Bauche, A. Kruppa, T. Klokow, G. Kammler, and J. Kruppa Nucleolar Binding Sequences of the Ribosomal Protein S6e Family Reside in Evolutionary Highly Conserved Peptide Clusters Mol. Biol. Evol., March 1, 2008; 25(3): 580 - 590. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Martin-Marcos, A. G. Hinnebusch, and M. Tamame Ribosomal Protein L33 Is Required for Ribosome Biogenesis, Subunit Joining, and Repression of GCN4 Translation Mol. Cell. Biol., September 1, 2007; 27(17): 5968 - 5985. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Kruger, H. Zentgraf, and U. Scheer Intranucleolar sites of ribosome biogenesis defined by the localization of early binding ribosomal proteins J. Cell Biol., May 21, 2007; 177(4): 573 - 578. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Orru, A. Aspesi, M. Armiraglio, M. Caterino, F. Loreni, M. Ruoppolo, C. Santoro, and I. Dianzani Analysis of the Ribosomal Protein S19 Interactome Mol. Cell. Proteomics, March 1, 2007; 6(3): 382 - 393. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. V. Rosado, C. Dez, S. Lebaron, M. Caizergues-Ferrer, Y. Henry, and J. de la Cruz Characterization of Saccharomyces cerevisiae Npa2p (Urb2p) Reveals a Low-Molecular-Mass Complex Containing Dbp6p, Npa1p (Urb1p), Nop8p, and Rsa3p Involved in Early Steps of 60S Ribosomal Subunit Biogenesis Mol. Cell. Biol., February 15, 2007; 27(4): 1207 - 1221. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. C. Fleischer, C. M. Weaver, K. J. McAfee, J. L. Jennings, and A. J. Link Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes & Dev., May 15, 2006; 20(10): 1294 - 1307. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. A. Bernstein, S. Granneman, A. V. Lee, S. Manickam, and S. J. Baserga Comprehensive Mutational Analysis of Yeast DEXD/H Box RNA Helicases Involved in Large Ribosomal Subunit Biogenesis Mol. Cell. Biol., February 15, 2006; 26(4): 1195 - 1208. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. Leger-Silvestre, J. M. Caffrey, R. Dawaliby, D. A. Alvarez-Arias, N. Gas, S. J. Bertolone, P.-E. Gleizes, and S. R. Ellis Specific Role for Yeast Homologs of the Diamond Blackfan Anemia-associated Rps19 Protein in Ribosome Synthesis J. Biol. Chem., November 18, 2005; 280(46): 38177 - 38185. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. L. DE MARCHIS, A. GIORGI, M. E. SCHININA, I. BOZZONI, and A. FATICA Rrp15p, a novel component of pre-ribosomal particles required for 60S ribosome subunit maturation RNA, April 1, 2005; 11(4): 495 - 502. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. A. Bernstein, J. E. G. Gallagher, B. M. Mitchell, S. Granneman, and S. J. Baserga The Small-Subunit Processome Is a Ribosome Assembly Intermediate Eukaryot. Cell, December 1, 2004; 3(6): 1619 - 1626. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. E.G. Gallagher, D. A. Dunbar, S. Granneman, B. M. Mitchell, Y. Osheim, A. L. Beyer, and S. J. Baserga RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components Genes & Dev., October 15, 2004; 18(20): 2506 - 2517. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Dez, C. Froment, J. Noaillac-Depeyre, B. Monsarrat, M. Caizergues-Ferrer, and Y. Henry Npa1p, a Component of Very Early Pre-60S Ribosomal Particles, Associates with a Subset of Small Nucleolar RNPs Required for Peptidyl Transferase Center Modification Mol. Cell. Biol., July 15, 2004; 24(14): 6324 - 6337. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. V. ROSADO and J. DE LA CRUZ Npa1p is an essential trans-acting factor required for an early step in the assembly of 60S ribosomal subunits in Saccharomyces cerevisiae RNA, July 1, 2004; 10(7): 1073 - 1083. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. de la Cruz, T. Lacombe, O. Deloche, P. Linder, and D. Kressler The Putative RNA Helicase Dbp6p Functionally Interacts With Rpl3p, Nop8p and the Novel trans-acting Factor Rsa3p During Biogenesis of 60S Ribosomal Subunits in Saccharomyces cerevisiae Genetics, April 1, 2004; 166(4): 1687 - 1699. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. FATICA, M. OEFFINGER, D. TOLLERVEY, and I. BOZZONI Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits RNA, December 1, 2003; 9(12): 1431 - 1436. [Abstract] [Full Text] [PDF] |
||||








