Published online 23 February 2004
Nucleic Acids Research, 2004, Vol. 32, No. 4 1335-1344
© 2004 Oxford University Press
The helixturnhelix motif of bacterial insertion sequence IS911 transposase is required for DNA binding
Laboratoire de Microbiologie et de Génétique Moléculaire, CNRS, 118 Route de Narbonne, F-31062 Toulouse Cedex, France
*To whom correspondence should be addressed. Tel: +33 5 61 33 59 16; Fax: +33 5 61 33 58 86; Email: philippe.rousseau{at}ibcg.biotoul.fr
The transposase of IS911, a member of the IS3 family of bacterial insertion sequences, is composed of a catalytic domain located at its C-terminal end and a DNA binding domain located at its N-terminal end. Analysis of the transposases of over 60 members of the IS3 family revealed the presence of a helixturnhelix (HTH) motif within the N-terminal region. Alignment of these potential secondary structures further revealed a completely conserved tryptophan residue similar to that found in the HTH motifs of certain homeodomain proteins. The analysis also uncovered a similarity between the IS3 family HTH and that of members of the LysR family of bacterial transcription factors. This information was used to design site-directed mutations permitting an assessment of its role in transposase function. A series of in vivo and in vitro tests demonstrated that the HTH domain is important in directing the transposase to bind the terminal inverted repeats of IS911.
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