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Nucleic Acids Research, 2004, Vol. 32, Database issue D347-D350
© 2004 Oxford University Press

FLAGdb++: a database for the functional analysis of the Arabidopsis genome

Franck Samson, Véronique Brunaud, Sylvain Duchêne, Yannick De Oliveira, Michel Caboche, Alain Lecharny and Sébastien Aubourg*

Unité de Recherche en Génomique Végétale (URGV), UMR INRA 1165, CNRS 8114, Université d’Evry Val d’Essonne, 2 rue Gaston Crémieux, CP 5708, F-91057 Evry Cedex, France

*To whom correspondence should be addressed. Tel: +33 1 60 87 45 16; Fax: +33 1 60 87 45 49; Email: aubourg{at}evry.inra.fr
The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors

FLAGdb++ is dedicated to the integration and visualization of data for high-throughput functional analysis of a fully sequenced genome, as illustrated for Arabidopsis. FLAGdb++ displays the predicted or experimental data in a position-dependent way and displays correlations and relationships between different features. FLAGdb++ provides for a given genome region, summarized characteristics of experimental materials like probe lengths, locations and specificities having an impact upon the confidence we will put in the experimental results. A selected subset of the available information is linked to a locus represented on an easy-to-interpret and memorable graphical display. Data are curated, processed and formatted before their integration into FLAGdb++. FLAGdb++ contains different options for easy back and forth navigation through many loci selected at the start of a session. It includes an original two-component visualization of the data, a genome-wide and a local view, which are permanently linked and display complementary information. Density curves along the chromosomes may be displayed in parallel for suggesting correlations between different structural and functional data. FLAGdb++ is fully accessible at http://genoplante-info.infobiogen.fr/FLAGdb/.


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