Skip Navigation

Nucleic Acids Research 2004 32(Web Server Issue):W313-W317; doi:10.1093/nar/gkh406
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (473K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Groth, D.
Right arrow Articles by Hennig, S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Groth, D.
Right arrow Articles by Hennig, S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2004, the authors
Nucleic Acids Research, Vol. 32, Web Server issue © Oxford University Press 2004; all rights reserved

GOblet: a platform for Gene Ontology annotation of anonymous sequence data

Detlef Groth, Hans Lehrach and Steffen Hennig*

Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany

* To whom correspondence should be addressed. Tel: +49 30 8413 1612; Fax: +49 30 8413 1380; Email: hennig{at}molgen.mpg.de

Received February 24, 2004; Revised and Accepted March 29, 2004

GOblet is a comprehensive web server application providing the annotation of anonymous sequence data with Gene Ontology (GO) terms. It uses a variety of different protein databases (human, murines, invertebrates, plants, sp-trembl) and their respective GO mappings. The user selects the appropriate database and alignment threshold and thereafter submits single or multiple nucleotide or protein sequences. Results are shown in different ways, e.g. as survey statistics for the main GO categories for all sequences or as detailed results for each single sequence that has been submitted. In its newest version, GOblet allows the batch submission of sequences and provides an improved display of results with the aid of Java applets. All output data, together with the Java applet, are packed to a downloadable archive for local installation and analysis. GOblet can be accessed freely at http://goblet.molgen.mpg.de.

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Brief BioinformHome page
J. Skolnick and M. Brylinski
FINDSITE: a combined evolution/structure-based approach to protein function prediction
Brief Bioinform, July 1, 2009; 10(4): 378 - 391.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Gotz, J. M. Garcia-Gomez, J. Terol, T. D. Williams, S. H. Nagaraj, M. J. Nueda, M. Robles, M. Talon, J. Dopazo, and A. Conesa
High-throughput functional annotation and data mining with the Blast2GO suite
Nucleic Acids Res., June 1, 2008; 36(10): 3420 - 3435.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. N. Wass and M. J. E. Sternberg
ConFunc--functional annotation in the twilight zone
Bioinformatics, March 15, 2008; 24(6): 798 - 806.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. Brylinski and J. Skolnick
A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation
PNAS, January 8, 2008; 105(1): 129 - 134.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
H. K. Saini and D. Fischer
FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W499 - W502.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
I. Friedberg
Automated protein function prediction--the genomic challenge
Brief Bioinform, September 1, 2006; 7(3): 225 - 242.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Ye, L. Fang, H. Zheng, Y. Zhang, J. Chen, Z. Zhang, J. Wang, S. Li, R. Li, L. Bolund, et al.
WEGO: a web tool for plotting GO annotations.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W293 - W297.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
I. Friedberg, T. Harder, and A. Godzik
JAFA: a protein function annotation meta-server.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W379 - W381.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
G. M. Knudsen, K. F. Medzihradszky, K.-C. Lim, E. Hansell, and J. H. McKerrow
Proteomic Analysis of Schistosoma mansoni Cercarial Secretions
Mol. Cell. Proteomics, December 1, 2005; 4(12): 1862 - 1875.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
S. Hong, I. Choi, J.-M. Woo, J. Oh, T. Kim, E. Choi, T.-W. Kim, Y.-K. Jung, D. H. Kim, C.-H. Sun, et al.
Identification and Integrative Analysis of 28 Novel Genes Specifically Expressed and Developmentally Regulated in Murine Spermatogenic Cells
J. Biol. Chem., March 4, 2005; 280(9): 7685 - 7693.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.