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Nucleic Acids Research 2005 33(10):3085-3094; doi:10.1093/nar/gki622
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Published online 1 June 2005

© The Author 2005. Published by Oxford University Press. All rights reserved
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Article

A monoclonal antibody that inhibits mycobacterial DNA gyrase by a novel mechanism

Ujjini H. Manjunatha, Anthony Maxwell1 and Valakunja Nagaraja*

Department of Microbiology and Cell Biology, Indian Institute of Science Bangalore, 560 012, India 1Department of Biological Chemistry, John Innes Centre Norwich Research Park, Colney, Norwich NR4 7UH, UK

*To whom correspondence should be addressed. Tel: +91 80 2360 0668; Fax: +91 80 2360 2697; Email: vraj{at}mcbl.iisc.ernet.in

Received March 15, 2005. Revised May 10, 2005. Accepted May 10, 2005.

DNA gyrase is a DNA topoisomerase indispensable for cellular functions in bacteria. We describe a novel, hitherto unknown, mechanism of specific inhibition of Mycobacterium smegmatis and Mycobacterium tuberculosis DNA gyrase by a monoclonal antibody (mAb). Binding of the mAb did not affect either GyrA–GyrB or gyrase–DNA interactions. More importantly, the ternary complex of gyrase–DNA–mAb retained the ATPase activity of the enzyme and was competent to catalyse DNA cleavage–religation reactions, implying a new mode of action different from other classes of gyrase inhibitors. DNA gyrase purified from fluoroquinolone-resistant strains of M.tuberculosis and M.smegmatis were inhibited by the mAb. The absence of cross-resistance of the drug-resistant enzymes from two different sources to the antibody-mediated inhibition corroborates the new mechanism of inhibition. We suggest that binding of the mAb in the proximity of the primary dimer interface region of GyrA in the heterotetrameric enzyme appears to block the release of the transported segment after strand passage, leading to enzyme inhibition. The specific inhibition of mycobacterial DNA gyrase with the mAb opens up new avenues for designing novel lead molecules for drug discovery and for probing gyrase mechanism.


Present address: Ujjini H. Manjunatha, Tuberculosis Research Section, NIAID, National Institutes of Health, 12441 Parklawn Drive, Rockville, MD 20852, USA


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S. Sengupta, M. Shah, and V. Nagaraja
Glutamate racemase from Mycobacterium tuberculosis inhibits DNA gyrase by affecting its DNA-binding
Nucleic Acids Res., November 14, 2006; 34(19): 5567 - 5576.
[Abstract] [Full Text] [PDF]



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