Skip Navigation

Nucleic Acids Research 2005 33(Database Issue):D297-D302; doi:10.1093/nar/gki039
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (188K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Kersey, P.
Right arrow Articles by Apweiler, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kersey, P.
Right arrow Articles by Apweiler, R.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2005, Vol. 33, Database issue D297-D302
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

Paul Kersey*, Lawrence Bower, Lorna Morris, Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud1, Isabelle Phan1, Alexandre Gattiker1, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter Mclaren, Britt Reimholz2, Laurent Duret3, Simon Penel3, Ingmar Reuter4 and Rolf Apweiler

The EMBL Outstation–European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 1 Swiss Institute of Bioinformatics, CMU, 1 rue Michel Servet, 1211 Geneva 4, Switzerland, 2 RZPD Deutsches Ressourcenzentrum fr Genomforschung GmbH, Heubnerweg 6, 14059 Berlin, Germany, 3 Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558 Université Lyon 1, France and 4 BIOBASE GmbH, Halchtersche Strasse 33, D-38304 Wolfenbuttel, Germany

* To whom correspondence should be addressed. Tel: +44 1223 494601; Fax: +44 1223 494468; Email: pkersey{at}ebi.ac.uk

Received September 13, 2004; Revised September 17, 2004; Accepted September 27, 2004

Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism. The preparation of this analysis is supported through Genome Reviews, a new database of bacterial and archaeal DNA sequences in which annotation has been upgraded (compared to the original submission) through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM. Integr8 also allows the users to customize their own interactive analysis, and to download both customized and prepared datasets for their own use. Integr8 is available at http://www.ebi.ac.uk/integr8.

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
M. Michaut, S. Kerrien, L. Montecchi-Palazzi, F. Chauvat, C. Cassier-Chauvat, J.-C. Aude, P. Legrain, and H. Hermjakob
InteroPORC: automated inference of highly conserved protein interaction networks
Bioinformatics, July 15, 2008; 24(14): 1625 - 1631.
[Abstract] [PDF]

Home page
 GeneticsHome page
D. M. Riano-Pachon, L. G. G. Correa, R. Trejos-Espinosa, and B. Mueller-Roeber
Green Transcription Factors: A Chlamydomonas Overview
Genetics, May 1, 2008; 179(1): 31 - 39.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Yeats, J. Lees, A. Reid, P. Kellam, N. Martin, X. Liu, and C. Orengo
Gene3D: comprehensive structural and functional annotation of genomes
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D414 - D418.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
P. Lechat, L. Hummel, S. Rousseau, and I. Moszer
GenoList: an integrated environment for comparative analysis of microbial genomes
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D469 - D474.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Gama-Castro, V. Jimenez-Jacinto, M. Peralta-Gil, A. Santos-Zavaleta, M. I. Penaloza-Spinola, B. Contreras-Moreira, J. Segura-Salazar, L. Muniz-Rascado, I. Martinez-Flores, H. Salgado, et al.
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D120 - D124.
[Abstract] [Full Text] [PDF]

Home page
 Microbiol. Mol. Biol. Rev.Home page
M.-J. Han and S. Y. Lee
The Escherichia coli Proteome: Past, Present, and Future Prospects
Microbiol. Mol. Biol. Rev., June 1, 2006; 70(2): 362 - 439.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. Vallenet, L. Labarre, Z. Rouy, V. Barbe, S. Bocs, S. Cruveiller, A. Lajus, G. Pascal, C. Scarpelli, and C. Medigue
MaGe: a microbial genome annotation system supported by synteny results
Nucleic Acids Res., January 10, 2006; 34(1): 53 - 65.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. Cochrane, P. Aldebert, N. Althorpe, M. Andersson, W. Baker, A. Baldwin, K. Bates, S. Bhattacharyya, P. Browne, A. van den Broek, et al.
EMBL Nucleotide Sequence Database: developments in 2005
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D10 - D15.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Yeats, M. Maibaum, R. Marsden, M. Dibley, D. Lee, S. Addou, and C. A. Orengo
Gene3D: modelling protein structure, function and evolution
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D281 - D284.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
V. M. Markowitz, F. Korzeniewski, K. Palaniappan, E. Szeto, G. Werner, A. Padki, X. Zhao, I. Dubchak, P. Hugenholtz, I. Anderson, et al.
The integrated microbial genomes (IMG) system
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D344 - D348.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. Novatchkova, M. Wildpaner, D. Schweizer, and F. Eisenhaber
PhyloDome--visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W121 - W125.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Brooksbank, G. Cameron, and J. Thornton
The European Bioinformatics Institute's data resources: towards systems biology
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D46 - D53.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.