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Nucleic Acids Research 2005 33(Database Issue):D383-D389; doi:10.1093/nar/gki066
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Nucleic Acids Research, 2005, Vol. 33, Database issue D383-D389
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics

Nansheng Chen*, Todd W. Harris, Igor Antoshechkin1, Carol Bastiani1, Tamberlyn Bieri2, Darin Blasiar2, Keith Bradnam3, Payan Canaran, Juancarlos Chan1, Chao-Kung Chen3, Wen J. Chen1, Fiona Cunningham, Paul Davis3, Eimear Kenny1, Ranjana Kishore1, Daniel Lawson3, Raymond Lee1, Hans-Michael Muller1, Cecilia Nakamura1, Shraddha Pai4, Philip Ozersky2, Andrei Petcherski1, Anthony Rogers3, Aniko Sabo2, Erich M. Schwarz1, Kimberly Van Auken1, Qinghua Wang1, Richard Durbin3, John Spieth2, Paul W. Sternberg1 and Lincoln D. Stein

Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA, 1 Howard Hughes Medical Institute and California Institute of Technology, Pasadena, CA, USA, 2 Genome Sequencing Center, Washington University, St Louis, MO, USA, 3 The Wellcome Trust Sanger Institute, Hinxton, UK and 4 The Watson School of Biological Sciences, Cold Spring Harbor, NY 11724, USA

* To whom correspondence should be addressed. Tel: +1 516 367 8394; Fax: +1 516 367 8389; Email: chenn{at}cshl.org
The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors

Received August 21, 2004; Revised and Accepted October 5, 2004

WormBase (http://www.wormbase.org), the model organism database for information about Caenorhabditis elegans and related nematodes, continues to expand in breadth and depth. Over the past year, WormBase has added multiple large-scale datasets including SAGE, interactome, 3D protein structure datasets and NCBI KOGs. To accommodate this growth, the International WormBase Consortium has improved the user interface by adding new features to aid in navigation, visualization of large-scale datasets, advanced searching and data mining. Internally, we have restructured the database models to rationalize the representation of genes and to prepare the system to accept the genome sequences of three additional Caenorhabditis species over the coming year.


The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.


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