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Nucleic Acids Research 2005 33(Database Issue):D518-D522; doi:10.1093/nar/gki082
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Nucleic Acids Research, 2005, Vol. 33, Database issue D518-D522
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

FESD: a Functional Element SNPs Database in human

Hyo Jin Kang1,2,3, Kyoung Oak Choi1, Byung-Dong Kim2,3, Sangsoo Kim1 and Young Joo Kim1,*

1 National Genome Information Center, 52 Eoeun-dong, Yuseong-gu, Daejeon 305-333, Korea, 2 Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea and 3 Center for Plant Molecular Genetics and Breeding Research, Seoul National University, Seoul 151-742, Korea

* To whom correspondence should be addressed. Tel: +82 42 879 8540; Fax: +82 42 879 8519; Email: yjkim{at}kribb.re.kr

Received June 11, 2004; Revised and Accepted October 12, 2004

We have created the Functional Element SNPs Database (FESD) that categorizes functional elements in human genic regions and provides a set of single nucleotide polymorphisms (SNPs) located within each area. In the FESD, the human genic regions were divided into 10 different functional elements, such as promoter regions, CpG islands, 5'-untranslated regions (5'-UTRs), translation start sites, splice sites, coding exons, introns, translation stop sites, polyadenylation signals and 3'-UTRs, and subsequently, all the known SNPs were assigned to each functional element at their respective position. With the FESD web interface, users can select a set of SNPs in the specific functional elements and get their flanking sequences for genotyping experiments, which will help in finding mutations that contribute to the common and polygenic diseases. A web interface for the FESD is freely available at http://combio.kribb.re.kr/ksnp/resd/.

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.


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