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Nucleic Acids Research 2005 33(Database Issue):D637-D640; doi:10.1093/nar/gki127
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Nucleic Acids Research, 2005, Vol. 33, Database issue D637-D640
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved

ASRP: the Arabidopsis Small RNA Project Database

Adam M. Gustafson1,2, Edwards Allen1,2, Scott Givan1, Daniel Smith1,2, James C. Carrington1,2 and Kristin D. Kasschau1,2,*

1 Center for Gene Research and Biotechnology and 2 Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA

* To whom correspondence should be addressed. Tel: +1 541 737 3679; Fax: +1 541 737 3045; Email: kasschau{at}cgrb.oregonstate.edu

Received August 16, 2004; Revised and Accepted October 24, 2004

Eukaryotes produce functionally diverse classes of small RNAs (20–25 nt). These include microRNAs (miRNAs), which act as regulatory factors during growth and development, and short-interfering RNAs (siRNAs), which function in several epigenetic and post-transcriptional silencing systems. The Arabidopsis Small RNA Project (ASRP) seeks to characterize and functionally analyze the major classes of endogenous small RNAs in plants. The ASRP database provides a repository for sequences of small RNAs cloned from various Arabidopsis genotypes and tissues. Version 3.0 of the database contains 1920 unique sequences, with tools to assist in miRNA and siRNA identification and analysis. The comprehensive database is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu.

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