Nucleic Acids Research, 2005, Vol. 33, Database issue D666-D670
© 2005, the authors
Nucleic Acids Research, Vol. 33, Database issue © Oxford University Press 2005; all rights reserved
PoMaMo—a comprehensive database for potato genome data
RZPD German Resource Centre for Genome Research GmbH, Berlin, Germany and 1 Max-Planck-Institute for Plant Breeding Research, Cologne, Germany
* To whom correspondence should be addressed at Heubnerweg 6, D-14059 Berlin, Germany. Tel: +49 0 30 32639 261; Fax: +49 0 30 32639 111; Email: svenja{at}rzpd.de
Received August 13, 2004; Revised and Accepted September 17, 2004
A database for potato genome data (PoMaMo, Potato Maps and More) was established. The database contains molecular maps of all twelve potato chromosomes with about 1000 mapped elements, sequence data, putative gene functions, results from BLAST analysis, SNP and InDel information from different diploid and tetraploid potato genotypes, publication references, links to other public databases like GenBank (http://www.ncbi.nlm.nih.gov/) or SGN (Solanaceae Genomics Network, http://www.sgn.cornell.edu/), etc. Flexible search and data visualization interfaces enable easy access to the data via internet (https://gabi.rzpd.de/PoMaMo.html). The Java servlet tool YAMB (Yet Another Map Browser) was designed to interactively display chromosomal maps. Maps can be zoomed in and out, and detailed information about mapped elements can be obtained by clicking on an element of interest. The GreenCards interface allows a text-based data search by marker-, sequence- or genotype name, by sequence accession number, gene function, BLAST Hit or publication reference. The PoMaMo database is a comprehensive database for different potato genome data, and to date the only database containing SNP and InDel data from diploid and tetraploid potato genotypes.
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use permissions, please contact journals.permissions{at}oupjournals.org.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  K. Pajerowska-Mukhtar, B. Stich, U. Achenbach, A. Ballvora, J. Lubeck, J. Strahwald, E. Tacke, H.-R. Hofferbert, E. Ilarionova, D. Bellin, et al. Single Nucleotide Polymorphisms in the Allene Oxide Synthase 2 Gene Are Associated With Field Resistance to Late Blight in Populations of Tetraploid Potato Cultivars Genetics, March 1, 2009; 181(3): 1115 - 1127. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. M. Riano-Pachon, A. Nagel, J. Neigenfind, R. Wagner, R. Basekow, E. Weber, B. Mueller-Roeber, S. Diehl, and B. Kersten GabiPD: the GABI primary database--a plant integrative 'omics' database Nucleic Acids Res., January 1, 2009; 37(suppl_1): D954 - D959. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. Simko, K. G. Haynes, and R. W. Jones Assessment of Linkage Disequilibrium in Potato Genome With Single Nucleotide Polymorphism Markers Genetics, August 1, 2006; 173(4): 2237 - 2245. [Abstract] [Full Text] [PDF]
|
|