Skip Navigation

Nucleic Acids Research 2005 33(Web Server Issue):W324-W325; doi:10.1093/nar/gki401
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (41K) Freely available
Right arrow Screen PDF (42K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by McDermott, J.
Right arrow Articles by Samudrala, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by McDermott, J.
Right arrow Articles by Samudrala, R.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oupjournals.org

Article

BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes

Jason McDermott, Michal Guerquin, Zach Frazier, Aaron N. Chang and Ram Samudrala*

Department of Microbiology, University of Washington Seattle, WA, USA

*To whom correspondence should be addressed. Tel: +1 206 732 6122; Fax: +1 206 732 6055; Email: ram{at}compbio.washington.edu

Received February 14, 2005. Revised March 16, 2005. Accepted March 16, 2005.

We have made a number of enhancements to the previously described Bioverse web server and computational biology framework (http://bioverse.compbio.washington.edu). In this update, we provide an overview of the new features available that include: (i) expansion of the number of organisms represented in the Bioverse and addition of new data sources and novel prediction techniques not available elsewhere, including network-based annotation; (ii) reengineering the database backend and supporting code resulting in significant speed, search and ease-of use improvements; and (iii) creation of a stateful and dynamic web application frontend to improve interface speed and usability. Integrated Java-based applications also allow dynamic visualization of real and predicted protein interaction networks.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
S.-E. Schelhorn, T. Lengauer, and M. Albrecht
An integrative approach for predicting interactions of protein regions
Bioinformatics, August 15, 2008; 24(16): i35 - i41.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.