Skip Navigation

Nucleic Acids Research 2005 33(Web Server Issue):W36-W38; doi:10.1093/nar/gki410
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (877K) Freely available
Right arrow Screen PDF (126K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Bryson, K.
Right arrow Articles by Jones, D. T.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Bryson, K.
Right arrow Articles by Jones, D. T.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2005. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oupjournals.org

Article

Protein structure prediction servers at University College London

Kevin Bryson, Liam J. McGuffin, Russell L. Marsden, Jonathan J. Ward, Jaspreet S. Sodhi and David T. Jones*

Department of Computer Science, University College London Gower Street, London WC1E 6BT, UK

*To whom correspondence should be addressed. Tel: +44 20 7679 7982; Fax: +44 20 7387 1397; Email: D.Jones{at}cs.ucl.ac.uk

Received February 14, 2005. Revised March 14, 2005. Accepted March 14, 2005.

A number of state-of-the-art protein structure prediction servers have been developed by researchers working in the Bioinformatics Unit at University College London. The popular PSIPRED server allows users to perform secondary structure prediction, transmembrane topology prediction and protein fold recognition. More recent servers include DISOPRED for the prediction of protein dynamic disorder and DomPred for domain boundary prediction. These servers are available from our software home page at http://bioinf.cs.ucl.ac.uk/software.html.

The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Protein Eng Des SelHome page
S. E. Hart, C. J. Howe, K. Mizuguchi, and J. Fernandez-Recio
Docking of cytochrome c6 and plastocyanin to the aa3-type cytochrome c oxidase in the cyanobacterium Phormidium laminosum
Protein Eng. Des. Sel., September 29, 2008; (2008) gzn051v1.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. Just, F. Butter, M. Trenkmann, T. Heitkam, M. Morl, and H. Betat
A comparative analysis of two conserved motifs in bacterial poly(A) polymerase and CCA-adding enzyme
Nucleic Acids Res., September 1, 2008; 36(16): 5212 - 5220.
[Abstract] [Full Text] [PDF]

Home page
 J. Virol.Home page
E. Decroly, I. Imbert, B. Coutard, M. Bouvet, B. Selisko, K. Alvarez, A. E. Gorbalenya, E. J. Snijder, and B. Canard
Coronavirus Nonstructural Protein 16 Is a Cap-0 Binding Enzyme Possessing (Nucleoside-2'O)-Methyltransferase Activity
J. Virol., August 15, 2008; 82(16): 8071 - 8084.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
T. A. M. Bharat, S. Eisenbeis, K. Zeth, and B. Hocker
A {beta}{alpha}-barrel built by the combination of fragments from different folds
PNAS, July 22, 2008; 105(29): 9942 - 9947.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
L. Popolo, E. Ragni, C. Carotti, O. Palomares, R. Aardema, J. W. Back, H. L. Dekker, L. J. de Koning, L. de Jong, and C. G. de Koster
Disulfide Bond Structure and Domain Organization of Yeast {beta}(1,3)-Glucanosyltransferases Involved in Cell Wall Biogenesis
J. Biol. Chem., July 4, 2008; 283(27): 18553 - 18565.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
C. A. Daep, R. J. Lamont, and D. R. Demuth
Interaction of Porphyromonas gingivalis with Oral Streptococci Requires a Motif That Resembles the Eukaryotic Nuclear Receptor Box Protein-Protein Interaction Domain
Infect. Immun., July 1, 2008; 76(7): 3273 - 3280.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
K. Thorsen, K. D. Sorensen, A. S. Brems-Eskildsen, C. Modin, M. Gaustadnes, A.-M. K. Hein, M. Kruhoffer, S. Laurberg, M. Borre, K. Wang, et al.
Alternative Splicing in Colon, Bladder, and Prostate Cancer Identified by Exon Array Analysis
Mol. Cell. Proteomics, July 1, 2008; 7(7): 1214 - 1224.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
R. D. S. Dixon, D. K. Arneman, A. S. Rachlin, N. R. Sundaresan, M. J. Costello, S. L. Campbell, and C. A. Otey
Palladin Is an Actin Cross-linking Protein That Uses Immunoglobulin-like Domains to Bind Filamentous Actin
J. Biol. Chem., March 7, 2008; 283(10): 6222 - 6231.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
A. Breton, B. Pinson, F. Coulpier, M.-F. Giraud, A. Dautant, and B. Daignan-Fornier
Lethal Accumulation of Guanylic Nucleotides in Saccharomyces cerevisiae HPT1-Deregulated Mutants
Genetics, February 1, 2008; 178(2): 815 - 824.
[Abstract] [Full Text] [PDF]

Home page
 J. Clin. Microbiol.Home page
M. Enersen, I. Olsen, O. Kvalheim, and D. A. Caugant
fimA Genotypes and Multilocus Sequence Types of Porphyromonas gingivalis from Patients with Periodontitis
J. Clin. Microbiol., January 1, 2008; 46(1): 31 - 42.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
A. F. El Sheikh, A. T. Poret-Peterson, and M. G. Klotz
Characterization of Two New Genes, amoR and amoD, in the amo Operon of the Marine Ammonia Oxidizer Nitrosococcus oceani ATCC 19707
Appl. Envir. Microbiol., January 1, 2008; 74(1): 312 - 318.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
S. Halder, A. B. Datta, and P. Parrack
Probing the Antiprotease Activity of {lambda}CIII, an Inhibitor of the Escherichia coli Metalloprotease HflB (FtsH)
J. Bacteriol., November 15, 2007; 189(22): 8130 - 8138.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
B. A. Tews and G. Meyers
The Pestivirus Glycoprotein Erns Is Anchored in Plane in the Membrane via an Amphipathic Helix
J. Biol. Chem., November 9, 2007; 282(45): 32730 - 32741.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
P. F. Huesgen, P. Scholz, and I. Adamska
The Serine Protease HhoA from Synechocystis sp. Strain PCC 6803: Substrate Specificity and Formation of a Hexameric Complex Are Regulated by the PDZ Domain
J. Bacteriol., September 15, 2007; 189(18): 6611 - 6618.
[Abstract] [Full Text] [PDF]

Home page
 J. Virol.Home page
B. D. Lindenbach, B. M. Pragai, R. Montserret, R. K. F. Beran, A. M. Pyle, F. Penin, and C. M. Rice
The C Terminus of Hepatitis C Virus NS4A Encodes an Electrostatic Switch That Regulates NS5A Hyperphosphorylation and Viral Replication
J. Virol., September 1, 2007; 81(17): 8905 - 8918.
[Abstract] [Full Text] [PDF]

Home page
 Biophys. JHome page
A. Neumoin, B. Arshava, J. Becker, O. Zerbe, and F. Naider
NMR Studies in Dodecylphosphocholine of a Fragment Containing the Seventh Transmembrane Helix of a G-Protein-Coupled Receptor from Saccharomyces cerevisiae
Biophys. J., July 15, 2007; 93(2): 467 - 482.
[Abstract] [Full Text] [PDF]

Home page
 J. Virol.Home page
L. S. Z. Larsen, M. Zhang, N. Beliakova-Bethell, V. Bilanchone, A. Lamsa, K. Nagashima, R. Najdi, K. Kosaka, V. Kovacevic, J. Cheng, et al.
Ty3 Capsid Mutations Reveal Early and Late Functions of the Amino-Terminal Domain
J. Virol., July 1, 2007; 81(13): 6957 - 6972.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
K. Kaluzny, P. D. Abeyrathne, and J. S. Lam
Coexistence of Two Distinct Versions of O-Antigen Polymerase, Wzy-Alpha and Wzy-Beta, in Pseudomonas aeruginosa Serogroup O2 and Their Contributions to Cell Surface Diversity
J. Bacteriol., June 1, 2007; 189(11): 4141 - 4152.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
B. Dalhus, I. H. Helle, P. H. Backe, I. Alseth, T. Rognes, M. Bjoras, and J. K. Laerdahl
Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats
Nucleic Acids Res., April 1, 2007; 35(7): 2451 - 2459.
[Abstract] [Full Text] [PDF]

Home page
 NEJMHome page
Y. Jin, C. M. Mailloux, K. Gowan, S. L. Riccardi, G. LaBerge, D. C. Bennett, P. R. Fain, and R. A. Spritz
NALP1 in Vitiligo-Associated Multiple Autoimmune Disease
N. Engl. J. Med., March 22, 2007; 356(12): 1216 - 1225.
[Abstract] [Full Text] [PDF]

Home page
 J. Virol.Home page
S. D. Saban, M. Silvestry, G. R. Nemerow, and P. L. Stewart
Visualization of {alpha}-Helices in a 6-Angstrom Resolution Cryoelectron Microscopy Structure of Adenovirus Allows Refinement of Capsid Protein Assignments
J. Virol., December 15, 2006; 80(24): 12049 - 12059.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
B. Jayaram, K. Bhushan, S. R. Shenoy, P. Narang, S. Bose, P. Agrawal, D. Sahu, and V. Pandey
Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins
Nucleic Acids Res., December 4, 2006; 34(21): 6195 - 6204.
[Abstract] [Full Text] [PDF]

Home page
 J. Virol.Home page
X. Jiang, H. Jayaram, M. Kumar, S. J. Ludtke, M. K. Estes, and B. V. V. Prasad
Cryoelectron Microscopy Structures of Rotavirus NSP2-NSP5 and NSP2-RNA Complexes: Implications for Genome Replication
J. Virol., November 1, 2006; 80(21): 10829 - 10835.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
L. Chen, W. Wang, S. Ling, C. Jia, and F. Wang
KemaDom: a web server for domain prediction using kernel machine with local context.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W158 - W163.
[Abstract] [Full Text] [PDF]

Home page
 Hum Mol GenetHome page
G. A. Reeves, J. M. Thornton, and the BioSapiens Network of Excellence
Integrating biological data through the genome
Hum. Mol. Genet., April 15, 2006; 15(suppl_1): R81 - R87.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. A. Fox, S. L. Butland, S. McMillan, G. Campbell, and B. F. F. Ouellette
The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers
Nucleic Acids Res., July 1, 2005; 33(suppl_2): W3 - W24.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.