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Nucleic Acids Research 2006 34(Database Issue):D302-D305; doi:10.1093/nar/gkj120
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Nucleic Acids Research, 2006, Vol. 34, Database issue D302-D305
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

The RCSB PDB information portal for structural genomics

Andrei Kouranov, Lei Xie1, Joanna de la Cruz, Li Chen, John Westbrook, Philip E. Bourne1,2 and Helen M. Berman*

Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey 610 Taylor Road, Piscataway, NJ 08854-8087, USA 1San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA 2Department of Pharmacology, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA

*To whom correspondence should be addressed. Tel: +1 732 445 4667; Fax: +1 732 445 4320; Email: berman{at}rcsb.rutgers.edu

Received September 15, 2005. Revised October 19, 2005. Accepted October 19, 2005.

The RCSB Protein Data Bank (PDB) offers online tools, summary reports and target information related to the worldwide structural genomics initiatives from its portal at http://sg.pdb.org. There are currently three components to this site: Structural Genomics Initiatives contains information and links on each structural genomics site, including progress reports, target lists, target status, targets in the PDB and level of sequence redundancy; Targets provides combined target information, protocols and other data associated with protein structure determination; and Structures offers an assessment of the progress of structural genomics based on the functional coverage of the human genome by PDB structures, structural genomics targets and homology models. Functional coverage can be examined according to enzyme classification, gene ontology (biological process, cell component and molecular function) and disease.


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