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Nucleic Acids Research 2006 34(Database Issue):D315-D318; doi:10.1093/nar/gkj056
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Nucleic Acids Research, 2006, Vol. 34, Database issue D315-D318
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

The SWISS-MODEL Repository: new features and functionalities

Jürgen Kopp and Torsten Schwede*

Biozentrum der Universität Basel and Swiss Institute of Bioinformatics Basel, Switzerland

*To whom corresponding should be addressed. Tel: +41 61 267 15 81; Fax: +41 61 267 15 84; Email: Torsten.Schwede{at}unibas.ch

Received September 15, 2005. Accepted October 4, 2005.

The SWISS-MODEL Repository is a database of annotated 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline. As of September 2005, the repository contained 675 000 models for 604 000 different protein sequences of the UniProt database. Regular updates ensure that the content of the repository reflects the current state of sequence and structure databases, integrating new or modified target sequences, and making use of new template structures. Each Repository entry consists of one or more 3D models accompanied by detailed information about the target protein and the model building process: functional annotation, a detailed template selection log, target-template alignment, summary of the model building and model quality assessment. The SWISS-MODEL Repository is freely accessible at http://swissmodel.expasy.org/repository/.


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