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Nucleic Acids Research 2006 34(Database Issue):D456-D458; doi:10.1093/nar/gkj026
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Nucleic Acids Research, 2006, Vol. 34, Database issue D456-D458
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum

Ulrich Güldener1,3,*, Gertrud Mannhaupt2, Martin Münsterkötter3, Dirk Haase3, Matthias Oesterheld3, Volker Stümpflen3, Hans-Werner Mewes1,3 and Gerhard Adam4

1Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, Technische Universität München D-85350 Freising-Weihenstephan, Germany 2Department of Organismic Interactions, Max-Planck-Institute for Terrestrial Microbiology D-35043 Marburg, Germany 3GSF National Research Center for Environment and Health, Institute for Bioinformatics Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany 4Department of Applied Plant Sciences and Plant Biotechnology, Institute of Applied Genetics and Cell Biology, BOKU-University of Natural Resources and Applied Life Sciences Muthgasse 18, A-1190 Vienna, Austria

*To whom correspondence should be addressed. Tel: +49 89 3187 3579; Fax: +49 89 3187 3585; Email: u.gueldener{at}gsf.de

Received August 11, 2005. Revised September 21, 2005. Accepted September 21, 2005.

The MIPS Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two gene sets independently derived by automated annotation of the F.graminearum genome sequence. A complete manually revised gene set will be completed within the near future. The initial results of systematic manual correction of gene calls are already part of the current gene set. The database can be accessed to retrieve information from bioinformatics analyses and functional classifications of the proteins. The data are also organized in the well established MIPS catalogs and novel query techniques are available to search the data. The comprehensive set of gene calls was also used for the design of an Affymetrix GeneChip. The resource is accessible on http://mips.gsf.de/genre/proj/fusarium/.


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