Skip Navigation

Nucleic Acids Research 2006 34(Database Issue):D507-D510; doi:10.1093/nar/gkj122
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (163K) Freely available
Right arrow Screen PDF (99K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Cotter, D.
Right arrow Articles by Subramaniam, S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Cotter, D.
Right arrow Articles by Subramaniam, S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2006, Vol. 34, Database issue D507-D510
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

LMPD: LIPID MAPS proteome database

Dawn Cotter1, Andreia Maer1, Chittibabu Guda2, Brian Saunders1 and Shankar Subramaniam1,3,*

1San Diego Supercomputer Center, University of California 9500 Gilman Drive, La Jolla, CA 92093-0505, USA 2Gen*NY*sis Center for Excellence in Cancer Genomics and Department of Epidemiology and Biostatistics, University at Albany, State University of New York One Discovery drive, Rensselaer, NY 12144-3456, USA 3Departments of Bioengineering, Chemistry and Biochemistry, University of California 9500 Gilman Drive, La Jolla, CA 92093-0612, USA

*To whom correspondence should be addressed at 9500 Gilman Drive, MC-0505, San Diego, CA 92093-0505, USA. Tel: +1 858 822 0986; Fax: +1 858 822 3752; Email: shankar{at}sdsc.edu

Received August 15, 2005. Revised October 20, 2005. Accepted October 20, 2005.

The LIPID MAPS Proteome Database (LMPD) is an object-relational database of lipid-associated protein sequences and annotations. The initial release contains 2959 records, representing human and mouse proteins involved in lipid metabolism. UniProt IDs were obtained based on keyword search of KEGG and GO databases, and this LMPD protein list was then enhanced with annotations from UniProt, EntrezGene, ENZYME, GO, KEGG and other public resources. We also assigned associations with general lipid categories, based on GO and KEGG annotations. Users may search LMPD by database ID or keyword, and filter by species and/or lipid class associations; from the search results, one can then access a compilation of data relevant to each protein of interest, cross-linked to external databases. The LIPID MAPS Proteome Database (LMPD) is publicly available from the LIPID MAPS Consortium website (http://www.lipidmaps.org/). The direct URL is http://www.lipidmaps.org/data/proteome/index.cgi.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Poult. Sci.Home page
R. L. Walzem, R. A. Baillie, M. Wiest, R. Davis, S. M. Watkins, T. E. Porter, J. Simon, and L. A. Cogburn
Functional Annotation of Genomic Data with Metabolic Inference
Poult. Sci., July 1, 2007; 86(7): 1510 - 1522.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. Sud, E. Fahy, D. Cotter, A. Brown, E. A. Dennis, C. K. Glass, A. H. Merrill Jr, R. C. Murphy, C. R. H. Raetz, D. W. Russell, et al.
LMSD: LIPID MAPS structure database
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D527 - D532.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.