Skip Navigation

Nucleic Acids Research 2006 34(Database Issue):D562-D567; doi:10.1093/nar/gkj085
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (5884K) Freely available
Right arrow Screen PDF (765K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Blake, J. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Blake, J. A.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2006, Vol. 34, Database issue D562-D567
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org


Article

The Mouse Genome Database (MGD): updates and enhancements

Judith A. Blake*, Janan T. Eppig, Carol J. Bult, James A. Kadin, Joel E. Richardson and Mouse Genome Database Group

The Jackson Laboratory 600 Main Street, Bar Harbor, ME 04609, USA

*To whom correspondence should be addressed. Tel: +1 207 288 6248; Fax: +1 207 288 6132; Email: jblake{at}informatics.jax.org

Received September 15, 2005. Revised October 12, 2005. Accepted October 12, 2005.

The Mouse Genome Database (MGD) integrates genetic and genomic data for the mouse in order to facilitate the use of the mouse as a model system for understanding human biology and disease processes. A core component of the MGD effort is the acquisition and integration of genomic, genetic, functional and phenotypic information about mouse genes and gene products. MGD works within the broader bioinformatics community to define referential and semantic standards to facilitate data exchange between resources including the incorporation of information from the biomedical literature. MGD is also a platform for computational assessment of integrated biological data with the goal of identifying candidate genes associated with complex phenotypes. MGD is web accessible at http://www.informatics.jax.org. Recent improvements in MGD described here include the incorporation of an interactive genome browser, the enhancement of phenotype resources and the further development of functional annotation resources.


The Mouse Genome Database Group: M. T. Airey, A. Anagnostopoulos, R. M. Baldarelli, M. Baya, J. S. Beal, S. M. Bello, W. J. Boddy, D. W. Bradt, D. L. Burkart, N. E. Butler, J. Campbell, M. A. Cassell, L. E. Corbani, S. L. Cousins, D. J. Dahmen, H. Dene, A.D. Diehl, M.E. Dolan, H. J. Drabkin, Kim L. Forthofer, K. S. Frazer, P. Frost, P. L. Grant, D.P. Hill, M. Lennon-Pierce, J. Lewis, I. Lu, L. J. Maltais, M. McAndrews-Hill, L. McClellan, D. B. Miers, L. A. Miller, L. Ni, H. Ondo, J. E. Ormsby, D. Qi, T. B. K. Reddy, D. J. Reed, B. Richards-Smith, D. R. Shaw, R. Sinclair, C. L. Smith, P. Szauter, M. Tomczuk, M. B. Walker, D. O. Walton, L. L. Washburn, I. T. Witham and Y. Zhu


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
Nucleic Acids ResHome page
J. W. Huss III, P. Lindenbaum, M. Martone, D. Roberts, A. Pizarro, F. Valafar, J. B. Hogenesch, and A. I. Su
The Gene Wiki: community intelligence applied to human gene annotation
Nucleic Acids Res., September 15, 2009; (2009) gkp760v1.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. J. Harmar, R. A. Hills, E. M. Rosser, M. Jones, O. P. Buneman, D. R. Dunbar, S. D. Greenhill, V. A. Hale, J. L. Sharman, T. I. Bonner, et al.
IUPHAR-DB: the IUPHAR database of G protein-coupled receptors and ion channels
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D680 - D685.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. A. Blake, C. J. Bult, J. T. Eppig, J. A. Kadin, J. E. Richardson, and the Mouse Genome Database Group
The Mouse Genome Database genotypes::phenotypes
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D712 - D719.
[Abstract] [Full Text] [PDF]


Home page
Integr. Comp. Biol.Home page
C. J. Vinyard and B. A. Payseur
Of "mice" and mammals: utilizing classical inbred mice to study the genetic architecture of function and performance in mammals
Integr. Comp. Biol., September 1, 2008; 48(3): 324 - 337.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
I. Feldman, A. Rzhetsky, and D. Vitkup
Network properties of genes harboring inherited disease mutations
PNAS, March 18, 2008; 105(11): 4323 - 4328.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. B. Bowes, K. A. Snyder, E. Segerdell, R. Gibb, C. Jarabek, E. Noumen, N. Pollet, and P. D. Vize
Xenbase: a Xenopus biology and genomics resource
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D761 - D767.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. J. Bult, J. T. Eppig, J. A. Kadin, J. E. Richardson, J. A. Blake, and the Mouse Genome Database Group
The Mouse Genome Database (MGD): mouse biology and model systems
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D724 - D728.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
D. Liu, J. M. Brockman, B. Dass, L. N. Hutchins, P. Singh, J. R. McCarrey, C. C. MacDonald, and J. H. Graber
Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis
Nucleic Acids Res., January 12, 2007; 35(1): 234 - 246.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
D. L. Wheeler, T. Barrett, D. A. Benson, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, R. Edgar, S. Federhen, et al.
Database resources of the National Center for Biotechnology Information
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D5 - D12.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
K. D. Pruitt, T. Tatusova, and D. R. Maglott
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D61 - D65.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
P. Groth, N. Pavlova, I. Kalev, S. Tonov, G. Georgiev, H.-D. Pohlenz, and B. Weiss
PhenomicDB: a new cross-species genotype/phenotype resource
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D696 - D699.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
R. M. Kuhn, D. Karolchik, A. S. Zweig, H. Trumbower, D. J. Thomas, A. Thakkapallayil, C. W. Sugnet, M. Stanke, K. E. Smith, A. Siepel, et al.
The UCSC genome browser database: update 2007
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D668 - D673.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
N. Wiwatwattana, C. M. Landau, G. J. Cope, G. A. Harp, and A. Kumar
Organelle DB: an updated resource of eukaryotic protein localization and function
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D810 - D814.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. M. Smith, J. H. Finger, T. F. Hayamizu, I. J. McCright, J. T. Eppig, J. A. Kadin, J. E. Richardson, and M. Ringwald
The mouse Gene Expression Database (GXD): 2007 update
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D618 - D623.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. T. Eppig, J. A. Blake, C. J. Bult, J. A. Kadin, J. E. Richardson, and the Mouse Genome Database Group
The mouse genome database (MGD): new features facilitating a model system
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D630 - D637.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
D. A. Begley, D. M. Krupke, M. J. Vincent, J. P. Sundberg, C. J. Bult, and J. T. Eppig
Mouse Tumor Biology Database (MTB): status update and future directions
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D638 - D642.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. N. Twigger, M. Shimoyama, S. Bromberg, A. E. Kwitek, H. J. Jacob, and the RGD Team
The Rat Genome Database, update 2007--Easing the path from disease to data and back again
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D658 - D662.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. A. Bogue, S. C. Grubb, T. P. Maddatu, and C. J. Bult
Mouse Phenome Database (MPD)
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D643 - D649.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
E. M. Hulbert, L. J. Smink, E. C. Adlem, J. E. Allen, D. B. Burdick, O. S. Burren, C. C. Cavnor, G. E. Dolman, D. Flamez, K. F. Friery, et al.
T1DBase: integration and presentation of complex data for type 1 diabetes research
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D742 - D746.
[Abstract] [Full Text] [PDF]


Home page
Brief BioinformHome page
T. A. Eyre, M. W. Wright, M. J. Lush, and E. A. Bruford
HCOP: a searchable database of human orthology predictions
Brief Bioinform, January 1, 2007; 8(1): 2 - 5.
[Abstract] [Full Text] [PDF]


Home page
Proc Am Thorac SocHome page
Y. A. Lussier and Y. Liu
Computational Approaches to Phenotyping: High-Throughput Phenomics
Proceedings of the ATS, January 1, 2007; 4(1): 18 - 25.
[Abstract] [Full Text] [PDF]


Home page
Am. J. Physiol. Cell Physiol.Home page
T. Gabaldon
Computational approaches for the prediction of protein function in the mitochondrion
Am J Physiol Cell Physiol, December 1, 2006; 291(6): C1121 - C1128.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. R. Jonsson, G. Hache, M. D. Stenglein, S. C. Fahrenkrug, V. Andresdottir, and R. S. Harris
Evolutionarily conserved and non-conserved retrovirus restriction activities of artiodactyl APOBEC3F proteins
Nucleic Acids Res., November 14, 2006; 34(19): 5683 - 5694.
[Abstract] [Full Text] [PDF]


Home page
Genes Dev.Home page
A. V. Evsikov, J. H. Graber, J. M. Brockman, A. Hampl, A. E. Holbrook, P. Singh, J. J. Eppig, D. Solter, and B. B. Knowles
Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo
Genes & Dev., October 1, 2006; 20(19): 2713 - 2727.
[Abstract] [Full Text] [PDF]


Home page
J. Am. Med. Inform. Assoc.Home page
H. Liu, Z.-Z. Hu, M. Torii, C. Wu, and C. Friedman
Quantitative Assessment of Dictionary-based Protein Named Entity Tagging
J. Am. Med. Inform. Assoc., September 1, 2006; 13(5): 497 - 507.
[Abstract] [Full Text] [PDF]



Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.