Skip Navigation


Nucleic Acids Research Advance Access originally published online on December 5, 2006
Nucleic Acids Research 2007 35(Database issue):D16-D20; doi:10.1093/nar/gkl913
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (586K) Freely available
Right arrow Screen PDF (290K) Freely available
Right arrowOA All Versions of this Article:
35/suppl_1/D16    most recent
gkl913v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Kulikova, T.
Right arrow Articles by Apweiler, R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Kulikova, T.
Right arrow Articles by Apweiler, R.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2007, Vol. 35, Database issue D16-D20
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

EMBL Nucleotide Sequence Database in 2006

Tamara Kulikova*, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister, Siamak Sobhany, Peter Stoehr, Robert Vaughan, Dan Wu, Weimin Zhu and Rolf Apweiler

EMBL Outstation—European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK

*To whom correspondence should be addressed. Tel: +44 01223 494463; Fax: +44 1223 494468; Email: kulikova{at}ebi.ac.uk

Received September 15, 2006. Revised October 16, 2006. Accepted October 16, 2006.

The EMBL Nucleotide Sequence Database (http://www.ebi.ac.uk/embl) at the EMBL European Bioinformatics Institute, UK, offers a large and freely accessible collection of nucleotide sequences and accompanying annotation. The database is maintained in collaboration with DDBJ and GenBank. Data are exchanged between the collaborating databases on a daily basis to achieve optimal synchrony. Webin is the preferred tool for individual submissions of nucleotide sequences, including Third Party Annotation, alignments and bulk data. Automated procedures are provided for submissions from large-scale sequencing projects and data from the European Patent Office. In 2006, the volume of data has continued to grow exponentially. Access to the data is provided via SRS, ftp and variety of other methods. Extensive external and internal cross-references enable users to search for related information across other databases and within the database. All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk/. Changes over the past year include changes to the file format, further development of the EMBLCDS dataset and developments to the XML format.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
K. Liolios, I-M. A. Chen, K. Mavromatis, N. Tavernarakis, P. Hugenholtz, V. M. Markowitz, and N. C. Kyrpides
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
Nucleic Acids Res., November 13, 2009; (2009) gkp848v1.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
E. Pennacchietti, T. M. Lammens, G. Capitani, M. C. R. Franssen, R. A. John, F. Bossa, and D. De Biase
Mutation of His465 Alters the pH-dependent Spectroscopic Properties of Escherichia coli Glutamate Decarboxylase and Broadens the Range of Its Activity toward More Alkaline pH
J. Biol. Chem., November 13, 2009; 284(46): 31587 - 31596.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and E. W. Sayers
GenBank
Nucleic Acids Res., November 12, 2009; (2009) gkp1024v1.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. Ceol, A. Chatr Aryamontri, L. Licata, D. Peluso, L. Briganti, L. Perfetto, L. Castagnoli, and G. Cesareni
MINT, the molecular interaction database: 2009 update
Nucleic Acids Res., November 6, 2009; (2009) gkp983v1.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
W. Li, H. McWilliam, A. R. de la Torre, A. Grodowski, I. Benediktovich, M. Goujon, S. Nauche, and R. Lopez
Non-redundant patent sequence databases with value-added annotations at two levels
Nucleic Acids Res., November 1, 2009; (2009) gkp960v1.
[Abstract] [Full Text] [PDF]

Home page
 DatabaseHome page
L. A. Florez, S. F. Roppel, A. G. Schmeisky, C. R. Lammers, and J. Stulke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki
Database, September 17, 2009; 2009(0): bap012 - bap012.
[Abstract] [Full Text] [PDF]

Home page
 J R Soc InterfaceHome page
G. A Reeves, D. Talavera, and J. M Thornton
Genome and proteome annotation: organization, interpretation and integration
J R Soc Interface, February 6, 2009; 6(31): 129 - 147.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and E. W. Sayers
GenBank
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D26 - D31.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
T. Lima, A. H. Auchincloss, E. Coudert, G. Keller, K. Michoud, C. Rivoire, V. Bulliard, E. de Castro, C. Lachaize, D. Baratin, et al.
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D471 - D478.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. Carbajosa, A. Trigo, A. Valencia, and I. Cases
Bionemo: molecular information on biodegradation metabolism
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D598 - D602.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Oehm, D. Gilbert, A. Tauch, J. Stoye, and A. Goesmann
Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
Nucleic Acids Res., July 1, 2008; 36(suppl_2): W433 - W437.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Degtyarenko, P. de Matos, M. Ennis, J. Hastings, M. Zbinden, A. McNaught, R. Alcantara, M. Darsow, M. Guedj, and M. Ashburner
ChEBI: a database and ontology for chemical entities of biological interest
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D344 - D350.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Liolios, K. Mavromatis, N. Tavernarakis, and N. C. Kyrpides
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D475 - D479.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. D. Finn, J. Tate, J. Mistry, P. C. Coggill, S. J. Sammut, H.-R. Hotz, G. Ceric, K. Forslund, S. R. Eddy, E. L. L. Sonnhammer, et al.
The Pfam protein families database
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D281 - D288.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
W. Gregory Alvord, J. A. Roayaei, O. A. Quinones, and K. T. Schneider
A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R
Brief Bioinform, November 1, 2007; 8(6): 415 - 431.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.