Nucleic Acids Research Advance Access originally published online on November 16, 2006
Nucleic Acids Research 2007 35(Database issue):D301-D303; doi:10.1093/nar/gkl971
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Nucleic Acids Research, 2007, Vol. 35, Database issue D301-D303
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Articles |
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
RCSB Protein Data Bank, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey 610 Taylor Road, Piscataway, NJ 08854-8087, USA 1 MSD-EBI, EMBL Outstation-Hinxton Cambridge CB10 1SD, UK 2 PDBj, Institute for Protein Research, Osaka University, 3-2 Yamadaoka Suita, Osaka 565-0871, Japan 3 BioMagResBank, University of Wisconsin-Madison, Department of Biochemistry, 433 Babcock Drive, Madison WI 53706, USA
*To whom correspondence should be addressed. Tel: +1 732 445 4667; Fax: +1 732 445 4320; Email: berman{at}rcsb.rutgers.edu
Received September 14, 2006. Accepted October 20, 2006.
The worldwide Protein Data Bank (wwPDB) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive is a repository for the coordinates and related information for more than 38 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The founding members of the wwPDB are RCSB PDB (USA), MSD-EBI (Europe) and PDBj (Japan) [H.M. Berman, K. Henrick and H. Nakamura (2003) Nature Struct. Biol., 10, 980]. The BMRB group (USA) joined the wwPDB in 2006. The mission of the wwPDB is to maintain a single archive of macromolecular structural data that are freely and publicly available to the global community. Additionally, the wwPDB provides a variety of services to a broad community of users. The wwPDB website at http://www.wwpdb.org/ provides information about services provided by the individual member organizations and about projects undertaken by the wwPDB.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  D. M. Standley, A. R. Kinjo, K. Kinoshita, and H. Nakamura Protein structure databases with new web services for structural biology and biomedical research Brief Bioinform, July 1, 2008; 9(4): 276 - 285. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. M. Overton, C. A. J. van Niekerk, L. G. Carter, A. Dawson, D. M. A. Martin, S. Cameron, S. A. McMahon, M. F. White, W. N. Hunter, J. H. Naismith, et al. TarO: a target optimisation system for structural biology Nucleic Acids Res., July 1, 2008; 36(suppl_2): W190 - W196. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. W. Brandt, J. Heringa, and J. A. M. Leunissen SEQATOMS: a web tool for identifying missing regions in PDB in sequence context Nucleic Acids Res., July 1, 2008; 36(suppl_2): W255 - W259. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Sczyrba, S. Konermann, and R. Giegerich Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server Brief Bioinform, May 1, 2008; 9(3): 243 - 249. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. M. Overton, G. Padovani, M. A. Girolami, and G. J. Barton ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction Bioinformatics, April 1, 2008; 24(7): 901 - 907. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Birzele, G. Csaba, and R. Zimmer Alternative splicing and protein structure evolution Nucleic Acids Res., February 2, 2008; 36(2): 550 - 558. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. S. Wishart, D. Arndt, M. Berjanskii, A. C. Guo, Y. Shi, S. Shrivastava, J. Zhou, Y. Zhou, and G. Lin PPT-DB: the protein property prediction and testing database Nucleic Acids Res., January 11, 2008; 36(suppl_1): D222 - D229. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Kono, T. Yuasa, S. Nishiue, and K. Yura coliSNP database server mapping nsSNPs on protein structures Nucleic Acids Res., January 11, 2008; 36(suppl_1): D409 - D413. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Degtyarenko, P. de Matos, M. Ennis, J. Hastings, M. Zbinden, A. McNaught, R. Alcantara, M. Darsow, M. Guedj, and M. Ashburner ChEBI: a database and ontology for chemical entities of biological interest Nucleic Acids Res., January 11, 2008; 36(suppl_1): D344 - D350. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Birzele, J. E. Gewehr, and R. Zimmer AutoPSI: a database for automatic structural classification of protein sequences and structures Nucleic Acids Res., January 11, 2008; 36(suppl_1): D398 - D401. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Saunders, S. Lyon, M. Day, B. Riley, E. Chenette, and S. Subramaniam The Molecule Pages database Nucleic Acids Res., January 11, 2008; 36(suppl_1): D700 - D706. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Zhang, O. Crasta, S. Cammer, R. Will, R. Kenyon, D. Sullivan, Q. Yu, W. Sun, R. Jha, D. Liu, et al. An emerging cyberinfrastructure for biodefense pathogen and pathogen host data Nucleic Acids Res., January 11, 2008; 36(suppl_1): D884 - D891. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Pagel, M. Oesterheld, O. Tovstukhina, N. Strack, V. Stumpflen, and D. Frishman DIMA 2.0 predicted and known domain interactions Nucleic Acids Res., January 11, 2008; 36(suppl_1): D651 - D655. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Birzele, R. Kuffner, F. Meier, F. Oefinger, C. Potthast, and R. Zimmer ProSAS: a database for analyzing alternative splicing in the context of protein structures Nucleic Acids Res., January 1, 2008; 36(suppl_1): D63 - D68. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Huhne, F.-T. Koch, and J. Suhnel A comparative view at comprehensive information resources on three-dimensional structures of biological macro-molecules Brief Funct Genomic Proteomic, October 23, 2007; (2007) elm020v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. C. Champ and C. J. Camacho FastContact: a free energy scoring tool for protein-protein complex structures Nucleic Acids Res., July 13, 2007; 35(suppl_2): W556 - W560. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. V. Shapovalov, A. A. Canutescu, and R. L. Dunbrack Jr. BioDownloader: bioinformatics downloads and updates in a few clicks Bioinformatics, June 1, 2007; 23(11): 1437 - 1439. [Abstract] [Full Text] [PDF]
|
|