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Nucleic Acids Research Advance Access originally published online on December 7, 2006
Nucleic Acids Research 2007 35(Database issue):D339-D342; doi:10.1093/nar/gkl1004
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Nucleic Acids Research, 2007, Vol. 35, Database issue D339-D342
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes

Masaki Hirahata, Takashi Abe, Naoto Tanaka1, Yoshikazu Kuwana2, Yasumasa Shigemoto2, Satoru Miyazaki1, Yoshiyuki Suzuki and Hideaki Sugawara*

Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics and Sokendai Shizuoka, Japan 1 Faculty of Pharmaceutical Sciences, Tokyo University of Science Chiba, Japan 2 Life Science Systems Division, Fujitsu Limited Tokyo, Japan

*To whom correspondence should be addressed. Tel: +81 55 981 6895; Fax: +81 55 981 6896; Email: hsugawar{at}genes.nig.ac.jp

Received September 15, 2006. Revised October 27, 2006. Accepted October 27, 2006.

Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org/) by DNA Data Bank of Japan (DDBJ), EMBL and GenBank and stored them in our system. The list of registered viruses is arranged hierarchically according to taxonomy. Keyword searches can be performed for genome/segment data or biological features of any virus stored in GIB-V. GIB-V is equipped with a BLAST search function, and search results are displayed graphically or in list form. Moreover, the BLAST results can be used online with the ClustalW feature of the DDBJ. All available virus genome/segment data can be collected by the GIB-V download function. GIB-V can be accessed at no charge at http://gib-v.genes.nig.ac.jp/.


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