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Nucleic Acids Research Advance Access originally published online on December 5, 2006
Nucleic Acids Research 2007 35(Database issue):D354-D357; doi:10.1093/nar/gkl1005
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Nucleic Acids Research, 2007, Vol. 35, Database issue D354-D357
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

PEDANT genome database: 10 years online

M. Louise Riley1, Thorsten Schmidt2, Irena I. Artamonova1, Christian Wagner3, Andreas Volz3, Klaus Heumann3, Hans-Werner Mewes1,2 and Dmitrij Frishman1,2,*

1 Institute for Bioinformatics, GSF-National Research Center for Health and Environment Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany 2 Department of Genome-oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München 85350 Freising, Germany 3 Biomax Informatics AG, Lochhamer Strasse 9 82152 Martinsried, Germany

*To whom correspondence should be addressed. Tel: +49 8161 712134; Fax: +49 8161 712186; Email: d.frishman{at}wzw.tum.de

Received September 15, 2006. Accepted October 30, 2006.

The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The all-new Graphical User Interface (GUI) implemented in JavaTM allows for more efficient navigation of the genome data, extended search capabilities, user customization and export facilities. The DNA and Protein viewers have been made highly dynamic and customizable. We also provide Web Services to access the entire body of PEDANT data programmatically. Finally, we report on the application of association rule mining for automatic detection of potential annotation errors. PEDANT is freely accessible to academic users at http://pedant.gsf.de.


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