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Nucleic Acids Research Advance Access originally published online on December 14, 2006
Nucleic Acids Research 2007 35(Database issue):D5-D12; doi:10.1093/nar/gkl1031
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Nucleic Acids Research, 2007, Vol. 35, Database issue D5-D12
Published by Oxford University Press 2006
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

Database resources of the National Center for Biotechnology Information

David L. Wheeler*, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner and Eugene Yaschenko

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA

*To whom correspondence should be addressed. Tel: +1 301 496 2475; Fax: +1 301 480 9241; Email: wheeler{at}ncbi.nlm.nih.gov

Received September 15, 2006. Revised October 16, 2006. Accepted October 17, 2006.

In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's Web site. NCBI resources include Entrez, the Entrez Programming Utilities, My NCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link(BLink), Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genome, Genome Project and related tools, the Trace and Assembly Archives, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups (COGs), Viral Genotyping Tools, Influenza Viral Resources, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART) and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. These resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.


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T. W. H. Backman, C. M. Sullivan, J. S. Cumbie, Z. A. Miller, E. J. Chapman, N. Fahlgren, S. A. Givan, J. C. Carrington, and K. D. Kasschau
Update of ASRP: the Arabidopsis Small RNA Project database
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D982 - D985.
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T. Rossignol, P. Lechat, C. Cuomo, Q. Zeng, I. Moszer, and C. d'Enfert
CandidaDB: a multi-genome database for Candida species and related Saccharomycotina
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D557 - D561.
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R. D. Finn, J. Tate, J. Mistry, P. C. Coggill, S. J. Sammut, H.-R. Hotz, G. Ceric, K. Forslund, S. R. Eddy, E. L. L. Sonnhammer, et al.
The Pfam protein families database
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D281 - D288.
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D. S. Wishart, C. Knox, A. C. Guo, D. Cheng, S. Shrivastava, D. Tzur, B. Gautam, and M. Hassanali
DrugBank: a knowledgebase for drugs, drug actions and drug targets
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D901 - D906.
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A.-C. Berglund, E. Sjolund, G. Ostlund, and E. L. L. Sonnhammer
InParanoid 6: eukaryotic ortholog clusters with inparalogs
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D263 - D266.
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J. Ruan, H. Li, Z. Chen, A. Coghlan, L. J. M. Coin, Y. Guo, J.-K. Heriche, Y. Hu, K. Kristiansen, R. Li, et al.
TreeFam: 2008 Update
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D735 - D740.
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M. Kuhn, C. von Mering, M. Campillos, L. J. Jensen, and P. Bork
STITCH: interaction networks of chemicals and proteins
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D684 - D688.
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D. Karolchik, R. M. Kuhn, R. Baertsch, G. P. Barber, H. Clawson, M. Diekhans, B. Giardine, R. A. Harte, A. S. Hinrichs, F. Hsu, et al.
The UCSC Genome Browser Database: 2008 update
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D773 - D779.
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V. Aidinis, C. Chandras, M. Manoloukos, A. Thanassopoulou, K. Kranidioti, M. Armaka, E. Douni, D. L. Kontoyiannis, M. Zouberakis, G. Kollias, et al.
MUGEN mouse database; Animal models of human immunological diseases
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D1048 - D1054.
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