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Nucleic Acids Research Advance Access originally published online on November 1, 2006
Nucleic Acids Research 2007 35(Database issue):D515-D520; doi:10.1093/nar/gkl774
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Nucleic Acids Research, 2007, Vol. 35, Database issue D515-D520
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms

Gemma L. Holliday*, Daniel E. Almonacid1, Gail J. Bartlett, Noel M. O'Boyle1, James W. Torrance, Peter Murray-Rust1, John B. O. Mitchell1 and Janet M. Thornton

EMBL-EBI, Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD, UK 1 Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge CB2 1EW, UK

*To whom correspondence should be addressed. Tel: +44 1223 492535; Fax: +44 1223 494486; Email: gemma{at}ebi.ac.uk

Received August 4, 2006. Revised September 18, 2006. Accepted October 1, 2006.

MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms, and is publicly available as a web-based data resource. This paper presents the first release of a web-based search tool to explore enzyme reaction mechanisms in MACiE. We also present Version 2 of MACiE, which doubles the dataset available (from Version 1). MACiE can be accessed from http://www.ebi.ac.uk/thornton-srv/databases/MACiE/

Present address: Gail J. Bartlett, Division of Mathematical Biology, National Institute of Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK


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