Nucleic Acids Research Advance Access originally published online on December 5, 2006
Nucleic Acids Research 2007 35(Database issue):D610-D617; doi:10.1093/nar/gkl996
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Nucleic Acids Research, 2007, Vol. 35, Database issue D610-D617
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Articles |
Ensembl 2007
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridgeshire CB10 1SA, UK 1 European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus Hinxton, Cambridgeshire CB10 1SA, UK
*To whom correspondence should be addressed. Tel: +44 1223 496886; Fax: +44 1223 496802; Email: th{at}sanger.ac.uk
Received September 23, 2006. Revised October 27, 2006. Accepted October 30, 2006.
The Ensembl (http://www.ensembl.org/) project provides a comprehensive and integrated source of annotation of chordate genome sequences. Over the past year the number of genomes available from Ensembl has increased from 15 to 33, with the addition of sites for the mammalian genomes of elephant, rabbit, armadillo, tenrec, platypus, pig, cat, bush baby, common shrew, microbat and european hedgehog; the fish genomes of stickleback and medaka and the second example of the genomes of the sea squirt (Ciona savignyi) and the mosquito (Aedes aegypti). Some of the major features added during the year include the first complete gene sets for genomes with low-sequence coverage, the introduction of new strain variation data and the introduction of new orthology/paralog annotations based on gene trees.
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M. J. Fullwood, J. J. S. Tan, P. W. P. Ng, K. P. Chiu, J. Liu, C. L. Wei, and Y. Ruan The use of multiple displacement amplification to amplify complex DNA libraries Nucleic Acids Res., March 1, 2008; 36(5): e32 - e32. [Abstract] [Full Text] [PDF]
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 S. Struski, L. Mauvieux, C. Gervais, C. Helias, K. L. Liu, and M. Lessard ETV6/GOT1 fusion in a case of t(10;12)(q24;p13)-positive myelodysplastic syndrome Haematologica, March 1, 2008; 93(3): 467 - 468. [Abstract] [Full Text] [PDF]
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A. C. Roman, D. A. Benitez, J. M. Carvajal-Gonzalez, and P. M. Fernandez-Salguero Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo PNAS, February 5, 2008; 105(5): 1632 - 1637. [Abstract] [Full Text] [PDF]
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F. Birzele, G. Csaba, and R. Zimmer Alternative splicing and protein structure evolution Nucleic Acids Res., February 2, 2008; 36(2): 550 - 558. [Abstract] [Full Text] [PDF]
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A. Prachumwat and W.-H. Li Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes Genome Res., February 1, 2008; 18(2): 221 - 232. [Abstract] [Full Text] [PDF]
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T. Abeel, Y. Saeys, E. Bonnet, P. Rouze, and Y. Van de Peer Generic eukaryotic core promoter prediction using structural features of DNA Genome Res., February 1, 2008; 18(2): 310 - 323. [Abstract] [Full Text] [PDF]
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