Skip Navigation


Nucleic Acids Research Advance Access originally published online on November 16, 2006
Nucleic Acids Research 2007 35(Database issue):D624-D629; doi:10.1093/nar/gkl833
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (1729K) Freely available
Right arrow Screen PDF (331K) Freely available
Right arrowOA All Versions of this Article:
35/suppl_1/D624    most recent
gkl833v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Egea, R.
Right arrow Articles by Barbadilla, A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Egea, R.
Right arrow Articles by Barbadilla, A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2007, Vol. 35, Database issue D624-D629
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

MamPol: a database of nucleotide polymorphism in the Mammalia class

Raquel Egea, Sònia Casillas, Enol Fernández1, Miquel Àngel Senar1 and Antonio Barbadilla*

Departament de Genètica i Microbiologia, Universitat Autònoma de Barcelona 08193 Bellaterra, Barcelona, Spain 1 Departament d'Arquitectura d'Ordinadors i Sistemes Operatius, Universitat Autònoma de Barcelona 08193 Bellaterra, Barcelona, Spain

*To whom correspondence should be addressed. Tel: +34 93 581 2730; Fax: +34 93 581 2387; Email: antonio.barbadilla{at}uab.es

Received July 31, 2006. Revised October 6, 2006. Accepted October 6, 2006.

Multi-locus and multi-species nucleotide diversity studies would benefit enormously from a public database encompassing high-quality haplotypic sequences with their associated genetic diversity measures. MamPol, ‘Mammalia Polymorphism Database’, is a website containing all the well-annotated polymorphic sequences available in GenBank for the Mammalia class grouped by name of organism and gene. Diversity measures of single nucleotide polymorphisms are provided for each set of haplotypic homologous sequences, including polymorphism at synonymous and non-synonymous sites, linkage disequilibrium and codon bias. Data gathering, calculation of diversity measures and daily updates are automatically performed using PDA software. The MamPol website includes several interfaces for browsing the contents of the database and making customizable comparative searches of different species or taxonomic groups. It also contains a set of tools for simple re-analysis of the available data and a statistics section that is updated daily and summarizes the contents of the database. MamPol is available at http://mampol.uab.es/ and can be downloaded via FTP.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
R. Egea, S. Casillas, and A. Barbadilla
Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites
Nucleic Acids Res., July 1, 2008; 36(suppl_2): W157 - W162.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.