Skip Navigation


Nucleic Acids Research Advance Access originally published online on April 27, 2007
Nucleic Acids Research 2007 35(Web Server issue):W81-W85; doi:10.1093/nar/gkm257
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (2645K) Freely available
Right arrow Screen PDF (447K) Freely available
Right arrowOA All Versions of this Article:
35/suppl_2/W81    most recent
gkm257v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Conde, L.
Right arrow Articles by Dopazo, J.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Conde, L.
Right arrow Articles by Dopazo, J.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2007, Vol. 35, No. suppl_2 W81-W85
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling

Lucía Conde1, David Montaner1,2, Jordi Burguet-Castell1, Joaquín Tárraga1,2, Ignacio Medina1, Fátima Al-Shahrour1 and Joaquín Dopazo1,2,*

1Bioinformatics Department, Centro de Investigación Príncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain

*To whom correspondence should be addressed. Tel: +34 963289680; Fax: +34 963289701; Email: jdopazo{at}cipf.es

Received January 30, 2007. Revised March 28, 2007. Accepted April 8, 2007.

We present the ISACGH, a web-based system that allows for the combination of genomic data with gene expression values and provides different options for functional profiling of the regions found. Several visualization options offer a convenient representation of the results. Different efficient methods for accurate estimation of genomic copy number from array-CGH hybridization data have been included in the program. Moreover, the connection to the gene expression analysis package GEPAS allows the use of different facilities for data pre-processing and analysis. A DAS server allows exporting the results to the Ensembl viewer where contextual genomic information can be obtained. The program is freely available at: http://isacgh.bioinfo.cipf.es or within http://www.gepas.org.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
H. Lee, S. W. Kong, and P. J. Park
Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
Bioinformatics, April 1, 2008; 24(7): 889 - 896.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.