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Nucleic Acids Research Advance Access originally published online on October 11, 2007
Nucleic Acids Research 2008 36(Database issue):D1034-D1040; doi:10.1093/nar/gkm803
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Nucleic Acids Research, 2008, Vol. 36, Database issue D1034-D1040
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data

Sook Jung1,*, Margaret Staton2, Taein Lee1, Anna Blenda2, Randall Svancara1, Albert Abbott2 and Dorrie Main1

1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA

* To whom correspondence should be addressed. Tel: 509 335 2774; Fax: 509 335 8690; Email: sook{at}bioinfo.wsu.edu

Received August 15, 2007. Revised September 14, 2007. Accepted September 17, 2007.

The Genome Database for Rosaceae (GDR) is a central repository of curated and integrated genetics and genomics data of Rosaceae, an economically important family which includes apple, cherry, peach, pear, raspberry, rose and strawberry. GDR contains annotated databases of all publicly available Rosaceae ESTs, the genetically anchored peach physical map, Rosaceae genetic maps and comprehensively annotated markers and traits. The ESTs are assembled to produce unigene sets of each genus and the entire Rosaceae. Other annotations include putative function, microsatellites, open reading frames, single nucleotide polymorphisms, gene ontology terms and anchored map position where applicable. Most of the published Rosaceae genetic maps can be viewed and compared through CMap, the comparative map viewer. The peach physical map can be viewed using WebFPC/WebChrom, and also through our integrated GDR map viewer, which serves as a portal to the combined genetic, transcriptome and physical mapping information. ESTs, BACs, markers and traits can be queried by various categories and the search result sites are linked to the mapping visualization tools. GDR also provides online analysis tools such as a batch BLAST/FASTA server for the GDR datasets, a sequence assembly server and microsatellite and primer detection tools. GDR is available at http://www.rosaceae.org.

The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.


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