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Nucleic Acids Research Advance Access originally published online on November 19, 2007
Nucleic Acids Research 2008 36(Database issue):D1041-D1043; doi:10.1093/nar/gkm1022
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Nucleic Acids Research, 2008, Vol. 36, Database issue D1041-D1043
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]

Articles

Panzea: an update on new content and features

Payan Canaran1, Edward S. Buckler2,3, Jeffrey C. Glaubitz4, Lincoln Stein1, Qi Sun5, Wei Zhao1 and Doreen Ware1,3,*

1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, 2Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853-2703, 3USDA-ARS NAA Plant, Soil & Nutrition Laboratory Research Unit, Tower Road, Ithaca, NY 14853-2901, 4Laboratory of Genetics, University of Wisconsin, 425-G Henry Mall, Madison, WI, 53706 and 5Computational Biology Service Unit, Cornell University, Ithaca, NY 14853, USA

To whom correspondence should be addressed. Tel: +1 516 367 6979; Fax: +1 516 367 6851; Email: ware{at}cshl.edu

Received September 24, 2007. Revised October 25, 2007. Accepted October 26, 2007.

Panzea (http://www.panzea.org), the public web site of the project ‘Molecular and Functional Diversity in the Maize Genome’, has expanded over the past two years in data content, display tools and informational sections. The most significant data content expansions occurred for the single nucleotide polymorphism (SNP), sequencing, isozyme and phenotypic data types. We have enhanced our existing web display tools and have launched a number of new tools for data display and analysis. For example, we have implemented one that allows users to find polymorphisms between two accessions, a geographic map tool to visualize the geographic distribution of SNPs, simple sequence repeats (SSRs) and isozyme alleles and a graphical view of the placement of Panzea markers and genes/loci on genetic and physical maps. One goal of the informatics component of our project has been to generate code that can be used by other groups. We have enhanced our existing code base and have made our new tools available. Finally, we have also made available new informational sections as part of our educational and outreach efforts.


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