Skip Navigation


Nucleic Acids Research Advance Access originally published online on November 26, 2007
Nucleic Acids Research 2008 36(Database issue):D281-D288; doi:10.1093/nar/gkm960
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (8891K) Freely available
Right arrow Screen PDF (1177K) Freely available
Right arrowOA All Versions of this Article:
36/suppl_1/D281    most recent
gkm960v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Finn, R. D.
Right arrow Articles by Bateman, A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Finn, R. D.
Right arrow Articles by Bateman, A.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2008, Vol. 36, Database issue D281-D288
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]

Articles

The Pfam protein families database

Robert D. Finn1,*, John Tate1, Jaina Mistry1, Penny C. Coggill1, Stephen John Sammut1, Hans-Rudolf Hotz1, Goran Ceric2, Kristoffer Forslund3, Sean R. Eddy2, Erik L. L. Sonnhammer3 and Alex Bateman1

1Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton Hall, Hinxton, Cambridgeshire, CB10 1SA, UK, 2Howard Hughes Medical Institute Janelia Farm Research Campus, 19700 Helix Drive, Ashburn, VA 20147, USA and 3Stockholm Bioinformatics Center, Albanova, Stockholm University, SE-10691 Stockholm, Sweden

*To whom correspondence should be addressed. Tel: +44 1223 495330; Fax: +44 1223 494919; Email: rdf{at}sanger.ac.uk

Received September 15, 2007. Revised October 10, 2007. Accepted October 16, 2007.

Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenPept and on sequences from selected metagenomics projects. Pfam is available on the web from the consortium members using a new, consistent and improved website design in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/), as well as from mirror sites in France (http://pfam.jouy.inra.fr/) and South Korea (http://pfam.ccbb.re.kr/).


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
J. Bacteriol.Home page
J. C. Setubal, P. dos Santos, B. S. Goldman, H. Ertesvag, G. Espin, L. M. Rubio, S. Valla, N. F. Almeida, D. Balasubramanian, L. Cromes, et al.
Genome Sequence of Azotobacter vinelandii, an Obligate Aerobe Specialized To Support Diverse Anaerobic Metabolic Processes
J. Bacteriol., July 15, 2009; 191(14): 4534 - 4545.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
Y.-J. Pan, C.-C. Cho, Y.-Y. Kao, and C.-H. Sun
A Novel WRKY-like Protein Involved in Transcriptional Activation of Cyst Wall Protein Genes in Giardia lamblia
J. Biol. Chem., July 3, 2009; 284(27): 17975 - 17988.
[Abstract] [Full Text] [PDF]


Home page
MicrobiologyHome page
S. Kimura, Y. Shiraiwa, and I. Suzuki
Function of the N-terminal region of the phosphate-sensing histidine kinase, SphS, in Synechocystis sp. PCC 6803
Microbiology, July 1, 2009; 155(7): 2256 - 2264.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
B. W. Brandt and J. Heringa
webPRC: the Profile Comparer for alignment-based searching of public domain databases
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W48 - W52.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
R. I. Sadreyev, M. Tang, B.-H. Kim, and N. V. Grishin
COMPASS server for homology detection: improved statistical accuracy, speed and functionality
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W90 - W94.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C.-C. Chen, C.-Y. Lin, Y.-S. Lo, and J.-M. Yang
PPISearch: a web server for searching homologous protein-protein interactions across multiple species
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W369 - W375.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. Bruggeman, J. Heringa, and B. W. Brandt
PhyloPars: estimation of missing parameter values using phylogeny
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W179 - W184.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Rose, S. Lorenzen, A. Goede, B. Gruening, and P. W. Hildebrand
RHYTHM--a server to predict the orientation of transmembrane helices in channels and membrane-coils
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W575 - W580.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. Shridhar, D. Chattopadhyay, and G. Yadav
PLecDom: a program for identification and analysis of plant lectin domains
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W452 - W458.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
D. T.-H. Chang, T.-Y. Chien, and C.-Y. Chen
seeMotif: exploring and visualizing sequence motifs in 3D structures
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W552 - W558.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Kuzniar, K. Lin, Y. He, H. Nijveen, S. Pongor, and J. A. M. Leunissen
ProGMap: an integrated annotation resource for protein orthology
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W428 - W434.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
H. Blankenburg, F. Ramirez, J. Buch, and M. Albrecht
DASMIweb: online integration, analysis and assessment of distributed protein interaction data
Nucleic Acids Res., July 1, 2009; 37(suppl_2): W122 - W128.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. C. Friedel, L. Dolken, Z. Ruzsics, U. H. Koszinowski, and R. Zimmer
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
Nucleic Acids Res., June 26, 2009; (2009) gkp542v1.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
M. Sandoval-Calderon, O. Geiger, Z. Guan, F. Barona-Gomez, and C. Sohlenkamp
A Eukaryote-like Cardiolipin Synthase Is Present in Streptomyces coelicolor and in Most Actinobacteria
J. Biol. Chem., June 26, 2009; 284(26): 17383 - 17390.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. Ehira, H. Ogino, H. Teramoto, M. Inui, and H. Yukawa
Regulation of Quinone Oxidoreductase by the Redox-sensing Transcriptional Regulator QorR in Corynebacterium glutamicum
J. Biol. Chem., June 19, 2009; 284(25): 16736 - 16742.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
O. Fornes, R. Aragues, J. Espadaler, M. A. Marti-Renom, A. Sali, and B. Oliva
ModLink+: improving fold recognition by using protein-protein interactions
Bioinformatics, June 15, 2009; 25(12): 1506 - 1512.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
J. Ramana and D. Gupta
ProtVirDB: a database of protozoan virulent proteins
Bioinformatics, June 15, 2009; 25(12): 1568 - 1569.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
X. Guo and A. J. Hartemink
Domain-oriented edge-based alignment of protein interaction networks
Bioinformatics, June 15, 2009; 25(12): i240 - 1246.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. A. McMahon, G. A. Roberts, K. A. Johnson, L. P. Cooper, H. Liu, J. H. White, L. G. Carter, B. Sanghvi, M. Oke, M. D. Walkinshaw, et al.
Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance
Nucleic Acids Res., June 8, 2009; (2009) gkp478v1.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
Y. Han, J. M. Burnette III, and S. R. Wessler
TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences
Nucleic Acids Res., June 1, 2009; 37(11): e78 - e78.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
D. N. Messina and E. L. L. Sonnhammer
DASher: a stand-alone protein sequence client for DAS, the Distributed Annotation System
Bioinformatics, May 15, 2009; 25(10): 1333 - 1334.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
H. Blankenburg, R. D. Finn, A. Prlic, A. M. Jenkinson, F. Ramirez, D. Emig, S.-E. Schelhorn, J. Buch, T. Lengauer, and M. Albrecht
DASMI: exchanging, annotating and assessing molecular interaction data
Bioinformatics, May 15, 2009; 25(10): 1321 - 1328.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
G. Minasov, S. Padavattan, L. Shuvalova, J. S. Brunzelle, D. J. Miller, A. Basle, C. Massa, F. R. Collart, T. Schirmer, and W. F. Anderson
Crystal Structures of YkuI and Its Complex with Second Messenger Cyclic Di-GMP Suggest Catalytic Mechanism of Phosphodiester Bond Cleavage by EAL Domains
J. Biol. Chem., May 8, 2009; 284(19): 13174 - 13184.
[Abstract] [Full Text] [PDF]


Home page
Brief BioinformHome page
M. K. Basu, E. Poliakov, and I. B. Rogozin
Domain mobility in proteins: functional and evolutionary implications
Brief Bioinform, May 1, 2009; 10(3): 205 - 216.
[Abstract] [Full Text] [PDF]


Home page
Infect. Immun.Home page
A. Wakeel, J. A. Kuriakose, and J. W. McBride
An Ehrlichia chaffeensis Tandem Repeat Protein Interacts with Multiple Host Targets Involved in Cell Signaling, Transcriptional Regulation, and Vesicle Trafficking
Infect. Immun., May 1, 2009; 77(5): 1734 - 1745.
[Abstract] [Full Text] [PDF]


Home page
MicrobiologyHome page
N. Jochmann, A.-K. Kurze, L. F. Czaja, K. Brinkrolf, I. Brune, A. T. Huser, N. Hansmeier, A. Puhler, I. Borovok, and A. Tauch
Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays
Microbiology, May 1, 2009; 155(5): 1459 - 1477.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. ProteomicsHome page
F. Kaschani, C. Gu, S. Niessen, H. Hoover, B. F. Cravatt, and R. A. L. van der Hoorn
Diversity of Serine Hydrolase Activities of Unchallenged and Botrytis-infected Arabidopsis thaliana
Mol. Cell. Proteomics, May 1, 2009; 8(5): 1082 - 1093.
[Abstract] [Full Text] [PDF]


Home page
J Exp BotHome page
J. J. Holland, D. Roberts, and E. Liscum
Understanding phototropism: from Darwin to today
J. Exp. Bot., May 1, 2009; 60(7): 1969 - 1978.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
A. M. Waterhouse, J. B. Procter, D. M. A. Martin, M. Clamp, and G. J. Barton
Jalview Version 2--a multiple sequence alignment editor and analysis workbench
Bioinformatics, May 1, 2009; 25(9): 1189 - 1191.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
I. Plyusnin, L. Holm, and M. Kankainen
LOCP--locating pilus operons in Gram-positive bacteria
Bioinformatics, May 1, 2009; 25(9): 1187 - 1188.
[Abstract] [Full Text] [PDF]


Home page
Plant Physiol.Home page
M. D. Lehti-Shiu, C. Zou, K. Hanada, and S.-H. Shiu
Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle Genes
Plant Physiology, May 1, 2009; 150(1): 12 - 26.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
H. A. Johnson, E. Hampton, and S. A. Lesley
The Thermotoga maritima Trk Potassium Transporter--from Frameshift to Function
J. Bacteriol., April 1, 2009; 191(7): 2276 - 2284.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
Y.-C. Lou, S.-Y. Wei, M. Rajasekaran, C.-C. Chou, H.-M. Hsu, J.-H. Tai, and C. Chen
NMR structural analysis of DNA recognition by a novel Myb1 DNA-binding domain in the protozoan parasite Trichomonas vaginalis
Nucleic Acids Res., April 1, 2009; 37(7): 2381 - 2394.
[Abstract] [Full Text] [PDF]


Home page
J Exp BotHome page
C.-c. Chen, C.-s. Liang, A.-l. Kao, and C.-c. Yang
HHP1 is involved in osmotic stress sensitivity in Arabidopsis
J. Exp. Bot., April 1, 2009; 60(6): 1589 - 1604.
[Abstract] [Full Text] [PDF]


Home page
The Plant GenomeHome page
L. A. Mueller, R. K. Lankhorst, S. D. Tanksley, J. J. Giovannoni, R. White, J. Vrebalov, Z. Fei, J. van Eck, R. Buels, A. A. Mills, et al.
A Snapshot of the Emerging Tomato Genome Sequence
The Plant Genome, March 1, 2009; 2(1): 78 - 92.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
A. M. Moses and R. Durbin
Inferring Selection on Amino Acid Preference in Protein Domains
Mol. Biol. Evol., March 1, 2009; 26(3): 527 - 536.
[Abstract] [Full Text] [PDF]


Home page
Plant Physiol.Home page
D. Chandran, Y. C. Tai, G. Hather, J. Dewdney, C. Denoux, D. G. Burgess, F. M. Ausubel, T. P. Speed, and M. C. Wildermuth
Temporal Global Expression Data Reveal Known and Novel Salicylate-Impacted Processes and Regulators Mediating Powdery Mildew Growth and Reproduction on Arabidopsis
Plant Physiology, March 1, 2009; 149(3): 1435 - 1451.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
A. V. Gribenko, M. M. Patel, J. Liu, S. A. McCallum, C. Wang, and G. I. Makhatadze
Rational stabilization of enzymes by computational redesign of surface charge-charge interactions
PNAS, February 24, 2009; 106(8): 2601 - 2606.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
I. D. Hay, U. Remminghorst, and B. H. A. Rehm
MucR, a Novel Membrane-Associated Regulator of Alginate Biosynthesis in Pseudomonas aeruginosa
Appl. Envir. Microbiol., February 15, 2009; 75(4): 1110 - 1120.
[Abstract] [Full Text] [PDF]


Home page
J R Soc InterfaceHome page
G. A Reeves, D. Talavera, and J. M Thornton
Genome and proteome annotation: organization, interpretation and integration
J R Soc Interface, February 6, 2009; 6(31): 129 - 147.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
A. Bateman, R. D. Finn, P. J. Sims, T. Wiedmer, A. Biegert, and J. Soding
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors
Bioinformatics, January 15, 2009; 25(2): 159 - 162.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
M. Weigt, R. A. White, H. Szurmant, J. A. Hoch, and T. Hwa
Identification of direct residue contacts in protein-protein interaction by message passing
PNAS, January 6, 2009; 106(1): 67 - 72.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
A. K. Bergfeld, H. Claus, N. K. Lorenzen, F. Spielmann, U. Vogel, and M. Muhlenhoff
The Polysialic Acid-specific O-Acetyltransferase OatC from Neisseria meningitidis Serogroup C Evolved Apart from Other Bacterial Sialate O-Acetyltransferases
J. Biol. Chem., January 2, 2009; 284(1): 6 - 16.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
D. A. Rodionov, P. Hebbeln, A. Eudes, J. ter Beek, I. A. Rodionova, G. B. Erkens, D. J. Slotboom, M. S. Gelfand, A. L. Osterman, A. D. Hanson, et al.
A Novel Class of Modular Transporters for Vitamins in Prokaryotes
J. Bacteriol., January 1, 2009; 191(1): 42 - 51.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
P. P. Chan and T. M. Lowe
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D93 - D97.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
D. M. Riano-Pachon, A. Nagel, J. Neigenfind, R. Wagner, R. Basekow, E. Weber, B. Mueller-Roeber, S. Diehl, and B. Kersten
GabiPD: the GABI primary database--a plant integrative 'omics' database
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D954 - D959.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. Gunther, J. von Eichborn, P. May, and R. Preissner
JAIL: a structure-based interface library for macromolecules
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D338 - D341.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
O. D. Testa, E. Moutevelis, and D. N. Woolfson
CC+: a relational database of coiled-coil structures
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D315 - D322.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
F. Kiefer, K. Arnold, M. Kunzli, L. Bordoli, and T. Schwede
The SWISS-MODEL Repository and associated resources
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D387 - D392.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
W. Klimke, R. Agarwala, A. Badretdin, S. Chetvernin, S. Ciufo, B. Fedorov, B. Kiryutin, K. O'Neill, W. Resch, S. Resenchuk, et al.
The National Center for Biotechnology Information's Protein Clusters Database
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D216 - D223.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
J. Martin, S. Abubucker, T. Wylie, Y. Yin, Z. Wang, and M. Mitreva
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D571 - D578.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. Hunter, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, U. Das, L. Daugherty, L. Duquenne, et al.
InterPro: the integrative protein signature database
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D211 - D215.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Stein, A. Panjkovich, and P. Aloy
3did Update: domain-domain and peptide-mediated interactions of known 3D structure
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D300 - D304.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
R. Nogales-Cadenas, F. Abascal, J. Diez-Perez, J. M. Carazo, and A. Pascual-Montano
CentrosomeDB: a human centrosomal proteins database
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D175 - D180.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
G. Ding, P. Lorenz, M. Kreutzer, Y. Li, and H.-J. Thiesen
SysZNF: the C2H2 zinc finger gene database
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D267 - D273.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
I. Letunic, T. Doerks, and P. Bork
SMART 6: recent updates and new developments
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D229 - D232.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Bhasi, P. Philip, V. Manikandan, and P. Senapathy
ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D703 - D711.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
A. Marchler-Bauer, J. B. Anderson, F. Chitsaz, M. K. Derbyshire, C. DeWeese-Scott, J. H. Fong, L. Y. Geer, R. C. Geer, N. R. Gonzales, M. Gwadz, et al.
CDD: specific functional annotation with the Conserved Domain Database
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D205 - D210.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
S. Fukuchi, K. Homma, S. Sakamoto, H. Sugawara, Y. Tateno, T. Gojobori, and K. Nishikawa
The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D333 - D337.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. J. Richardson, Q. Gao, C. Mitsopoulous, M. Zvelebil, L. H. Pearl, and F. M. G. Pearl
MoKCa database--mutations of kinases in cancer
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D824 - D831.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
H.-L. Liu, C. P.C. De Souza, A. H. Osmani, and S. A. Osmani
The Three Fungal Transmembrane Nuclear Pore Complex Proteins of Aspergillus nidulans Are Dispensable in the Presence of an Intact An-Nup84-120 Complex
Mol. Biol. Cell, January 1, 2009; 20(2): 616 - 630.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
A. E. Vinogradov
Modularity of cellular networks shows general center-periphery polarization
Bioinformatics, December 15, 2008; 24(24): 2814 - 2817.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
A.-C. Lindas, E. A. Karlsson, M. T. Lindgren, T. J. G. Ettema, and R. Bernander
A unique cell division machinery in the Archaea
PNAS, December 2, 2008; 105(48): 18942 - 18946.
[Abstract] [Full Text] [PDF]


Home page
Microbiol. Mol. Biol. Rev.Home page
V. Kunin, A. Copeland, A. Lapidus, K. Mavromatis, and P. Hugenholtz
A Bioinformatician's Guide to Metagenomics
Microbiol. Mol. Biol. Rev., December 1, 2008; 72(4): 557 - 578.
[Abstract] [Full Text] [PDF]


Home page
J. Bacteriol.Home page
K. Krishnan and A. M. Flower
Suppression of {Delta}bipA Phenotypes in Escherichia coli by Abolishment of Pseudouridylation at Specific Sites on the 23S rRNA
J. Bacteriol., December 1, 2008; 190(23): 7675 - 7683.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
G. A. Reeves, K. Eilbeck, M. Magrane, C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. P. Hubbard, et al.
The Protein Feature Ontology: a tool for the unification of protein feature annotations
Bioinformatics, December 1, 2008; 24(23): 2767 - 2772.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
C. D. Schlieker, A. G. Van der Veen, J. R. Damon, E. Spooner, and H. L. Ploegh
A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway
PNAS, November 25, 2008; 105(47): 18255 - 18260.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
D. Emig, M. S. Cline, T. Lengauer, and M. Albrecht
Integrating expression data with domain interaction networks
Bioinformatics, November 1, 2008; 24(21): 2546 - 2548.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
A. Andreeva and H. Tidow
A novel CHHC Zn-finger domain found in spliceosomal proteins and tRNA modifying enzymes
Bioinformatics, October 15, 2008; 24(20): 2277 - 2280.
[Abstract] [Full Text] [PDF]



Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.