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Nucleic Acids Research Advance Access originally published online on November 14, 2007
Nucleic Acids Research 2008 36(Database issue):D553-D556; doi:10.1093/nar/gkm981
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Nucleic Acids Research, 2008, Vol. 36, Database issue D553-D556
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

ToxoDB: an integrated Toxoplasma gondii database resource

Bindu Gajria1, Amit Bahl1, John Brestelli2, Jennifer Dommer2, Steve Fischer2, Xin Gao2, Mark Heiges3, John Iodice2, Jessica C. Kissinger3,4,*, Aaron J. Mackey1, Deborah F. Pinney2, David S. Roos1, Christian J. Stoeckert, Jr2, Haiming Wang3 and Brian P. Brunk2

1Department of Biology, 2Department of Genetics, Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, 3Center for Tropical & Emerging Global Diseases and 4Department of Genetics, University of Georgia, Athens, GA, USA

*To whom correspondence should be addressed: Tel: +1 706 542 6562; Fax: +1 706 542 3582; Email: jkissing{at}uga.edu

Received September 17, 2007. Revised October 17, 2007. Accepted October 18, 2007.

ToxoDB (http://ToxoDB.org) is a genome and functional genomic database for the protozoan parasite Toxoplasma gondii. It incorporates the sequence and annotation of the T. gondii ME49 strain, as well as genome sequences for the GT1, VEG and RH (Chr Ia, Chr Ib) strains. Sequence information is integrated with various other genomic-scale data, including community annotation, ESTs, gene expression and proteomics data. ToxoDB has matured significantly since its initial release. Here we outline the numerous updates with respect to the data and increased functionality available on the website.

Present address: Aaron J. Mackey, GlaxoSmithKline, Collegeville, PA, USA


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