Nucleic Acids Research Advance Access originally published online on August 24, 2007
Nucleic Acids Research 2008 36(Database issue):D618-D622; doi:10.1093/nar/gkm611
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Nucleic Acids Research, 2008, Vol. 36, Database issue D618-D622
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]
Articles |
PROCOGNATE: a cognate ligand domain mapping for enzymes
1EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD and 2King's College London, Randall Division of Cell and Molecular Biophysics, New Hunt's House, Guy's Campus, London, SE1 1UL, UK
*To whom correspondence should be addressed. Tel: +44 (0)1223 492543; Fax: +44 (0)1223 494468; Email: bashton{at}ebi.ac.uk
Received June 26, 2007. Revised July 16, 2007. Accepted July 26, 2007.
PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as recent increased coverage in our dataset via inclusion of Pfam domains. We also describe navigation of the website and its features. The current version (1.3) of PROCOGNATE covers 4123, 4536, 5876 structures and 377, 326, 695 superfamilies/families in CATH, SCOP and Pfam, respectively. PROCOGNATE can be accessed at: http://www.ebi.ac.uk/thornton-srv/databases/procognate/
Address from September 2007: Irene Nobeli, School of Crystallography, Birkbeck College, University of London, Malet Street, London WC1E 7HX, UK
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