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Nucleic Acids Research Advance Access originally published online on November 30, 2007
Nucleic Acids Research 2008 36(Database issue):D674-D678; doi:10.1093/nar/gkm911
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Nucleic Acids Research, 2008, Vol. 36, Database issue D674-D678
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]

Articles

Binding MOAD, a high-quality protein–ligand database

Mark L. Benson1, Richard D. Smith2, Nickolay A. Khazanov1, Brandon Dimcheff3, John Beaver3, Peter Dresslar3,4, Jason Nerothin4 and Heather A. Carlson1,2,4,*

1Bioinformatics Graduate Program, 2Biophysics Research Division, University of Michigan, Ann Arbor, MI 48109, 3Torrey Path LLC, Ann Arbor, MI 48104 and 4Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI 48109, USA

*To whom correspondence should be addressed. Tel: +1 734 615 6841; Email: carlsonh{at}umich.edu

Received September 15, 2007. Revised October 5, 2007. Accepted October 5, 2007.

Binding MOAD (Mother of All Databases) is a database of 9836 protein–ligand crystal structures. All biologically relevant ligands are annotated, and experimental binding-affinity data is reported when available. Binding MOAD has almost doubled in size since it was originally introduced in 2004, demonstrating steady growth with each annual update. Several technologies, such as natural language processing, help drive this constant expansion. Along with increasing data, Binding MOAD has improved usability. The website now showcases a faster, more featured viewer to examine the protein–ligand structures. Ligands have additional chemical data, allowing for cheminformatics mining. Lastly, logins are no longer necessary, and Binding MOAD is freely available to all at http://www.BindingMOAD.org.


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