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Nucleic Acids Research Advance Access originally published online on May 20, 2008
Nucleic Acids Research 2008 36(Web Server issue):W79-W84; doi:10.1093/nar/gkn275
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Nucleic Acids Research, 2008, Vol. 36, No. suppl_2 W79-W84
© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

WAR: Webserver for aligning structural RNAs

Elfar Torarinsson1 and Stinus Lindgreen2,*

1Division of Genetics and Bioinformatics, IBHV, Faculty of Life Sciences, University of Copenhagen, Groennegaardsvej 3, DK-1870 Frederiksberg C and 2Center for Bioinformatics, Department of Molecular Biology, University of Copenhagen, Ole Maaloes Vej 5, DK-2200 Copenhagen N, Denmark

*To whom correspondence should be addressed. Tel: +45 35321287; Fax: +45 3532 1281; Email: stinus{at}binf.ku.dk

Received January 14, 2008. Revised April 7, 2008. Accepted April 26, 2008.

We present an easy-to-use webserver that makes it possible to simultaneously use a number of state of the art methods for performing multiple alignment and secondary structure prediction for noncoding RNA sequences. This makes it possible to use the programs without having to download the code and get the programs to run. The results of all the programs are presented on a webpage and can easily be downloaded for further analysis. Additional measures are calculated for each program to make it easier to judge the individual predictions, and a consensus prediction taking all the programs into account is also calculated. This website is free and open to all users and there is no login requirement. The webserver can be found at: http://genome.ku.dk/resources/war.

The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors


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