Nucleic Acids Research Advance Access originally published online on March 12, 2009
Nucleic Acids Research 2009 37(9):2854-2866; doi:10.1093/nar/gkp155
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Nucleic Acids Research, 2009, Vol. 37, No. 9 2854-2866
© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Nucleic Acid Enzymes |
Proofreading exonuclease activity of human DNA polymerase
and its effects on lesion-bypass DNA synthesis
1Medical Science Division, 2Cancer Biomarker and Genotyping Facility and 3Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA 19111, USA
*To whom correspondence should be addressed. Tel: +1 215 728 5272; Fax: +1 215 728 4333; Email: yoshihiro.matsumoto{at}fccc.edu
Received February 19, 2009. Revised February 19, 2009. Accepted February 24, 2009.
Replicative DNA polymerases possess 3'
5' exonuclease activity to reduce misincorporation of incorrect nucleotides by proofreading during replication. To examine if this proofreading activity modulates DNA synthesis of damaged templates, we constructed a series of recombinant human DNA polymerase
(Pol
) in which one or two of the three conserved Asp residues in the exonuclease domain are mutated, and compared their properties with that of the wild-type enzyme. While all the mutant enzymes lost more than 95% exonuclease activity and severely decreased the proofreading activity than the wild-type, the bypass efficiency of damaged templates was varied: two mutant enzymes, D515V and D402A/D515A, gave higher bypass efficiencies on templates containing an abasic site, but another mutant, D316N/D515A, showed a lower bypass efficiency than the wild-type. All the enzymes including the wild-type inserted an adenine opposite the abasic site, whereas these enzymes inserted cytosine and adenine opposite an 8-oxoguanine with a ratio of 6:4. These results indicate that the exonuclease activity of human Pol
modulates its intrinsic bypass efficiency on the damaged template, but does not affect the choice of nucleotide to be inserted.
Present Addresses: Cynthia S. Spittle, Wyeth, Collegeville, PA, USA.
Darlene Morrissey, St. Luke's Hospital, Bethlehem, PA, USA.
Harutoshi Hayashi, Haru Pets Clinic, Kasugai, Aichi, Japan.