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Nucleic Acids Research Advance Access originally published online on October 28, 2008
Nucleic Acids Research 2009 37(Database issue):D539-D543; doi:10.1093/nar/gkn814
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Nucleic Acids Research, 2009, Vol. 37, Database issue D539-D543
© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]

Articles

PlasmoDB: a functional genomic database for malaria parasites

Cristina Aurrecoechea1, John Brestelli2, Brian P. Brunk2, Jennifer Dommer2, Steve Fischer2, Bindu Gajria2, Xin Gao2, Alan Gingle3, Greg Grant4, Omar S. Harb2,*, Mark Heiges1, Frank Innamorato2, John Iodice2, Jessica C. Kissinger1,5, Eileen Kraemer6, Wei Li2, John A. Miller6, Vishal Nayak2, Cary Pennington1, Deborah F. Pinney2, David S. Roos7, Chris Ross1, Christian J. Stoeckert, Jr.2, Charles Treatman2 and Haiming Wang1

1Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, 2Penn Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA 19104, 3Center for Applied Genetic Technologies, University of Georgia, Athens, GA 30602, 4School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, 5Department of Genetics, 6Department of Computer Science, University of Georgia, Athens, GA 30602 and 7Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA

*To whom correspondence should be addressed. Tel: +1 215 746 7019; Fax: +1 215 573 3111; Email: oharb{at}pcbi.upenn.edu

Correspondence may also be addressed to Brian P. Brunk. Tel: +1 215 573 3118; Fax: +1 215 573 3111; Email: brunkb{at}pcbi.upenn.edu; Jessica C. Kissinger. Tel: +1 706 542 6562; Fax: +1 706 542 3582; Email: jkissing{at}uga.edu; David S. Roos. Tel: +1 215 898 2118; Fax: +1 215 746 6697;Email: droos{at}sas.upenn.edu; Christian J. Stoeckert. Tel: +1 215 573 4409; Fax: +1 215 573 3111; Email: stoeckrt{at}pcbi.upenn.edu

Received September 15, 2008. Accepted October 3, 2008.

PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB belongs to a family of genomic resources that are housed under the EuPathDB (http://EuPathDB.org) Bioinformatics Resource Center (BRC) umbrella. The latest release, PlasmoDB 5.5, contains numerous new data types from several broad categories—annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution. Data in PlasmoDB can be queried by selecting the data of interest from a query grid or drop down menus. Various results can then be combined with each other on the query history page. Search results can be downloaded with associated functional data and registered users can store their query history for future retrieval or analysis.


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