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Nucleic Acids Research Advance Access originally published online on May 6, 2009
Nucleic Acids Research 2009 37(Web Server issue):W23-W27; doi:10.1093/nar/gkp265
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Nucleic Acids Research, 2009, Vol. 37, No. suppl_2 W23-W27
© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

BioMart Central Portal—unified access to biological data

Syed Haider1,2, Benoit Ballester1, Damian Smedley1, Junjun Zhang3, Peter Rice1 and Arek Kasprzyk3,*

1EMBL-European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, 2Computer Laboratory, University of Cambridge, 15 JJ Thomson Avenue, Cambridge CB3 0FD, UK and 3Ontario Institute for Cancer Research, MaRS Centre, 101 College Street, Toronto M5G 0A3, Canada

*To whom correspondence should be addressed. Email: arek.kasprzyk{at}oicr.on.ca

Received March 4, 2009. Revised April 8, 2009. Accepted April 8, 2009.

BioMart Central Portal (www.biomart.org) offers a one-stop shop solution to access a wide array of biological databases. These include major biomolecular sequence, pathway and annotation databases such as Ensembl, Uniprot, Reactome, HGNC, Wormbase and PRIDE; for a complete list, visit, http://www.biomart.org/biomart/martview. Moreover, the web server features seamless data federation making cross querying of these data sources in a user friendly and unified way. The web server not only provides access through a web interface (MartView), it also supports programmatic access through a Perl API as well as RESTful and SOAP oriented web services. The website is free and open to all users and there is no login requirement.


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