Skip Navigation


Nucleic Acids Research Advance Access originally published online on May 12, 2009
Nucleic Acids Research 2009 37(Web Server issue):W277-W280; doi:10.1093/nar/gkp367
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (3851K) Freely available
Right arrow Screen PDF (448K) Freely available
Right arrowOA All Versions of this Article:
37/suppl_2/W277    most recent
gkp367v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Sato, K.
Right arrow Articles by Mituyama, T.
PubMed
Right arrow PubMed Citation
Right arrow Articles by Sato, K.
Right arrow Articles by Mituyama, T.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2009, Vol. 37, No. suppl_2 W277-W280
© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

CENTROIDFOLD: a web server for RNA secondary structure prediction

Kengo Sato1,2,*, Michiaki Hamada2,3, Kiyoshi Asai2,4 and Toutai Mituyama2

1Japan Biological Informatics Consortium (JBIC), 2–45 Aomi, Koto-ku, Tokyo 135–8073, 2Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), 2–42 Aomi, Koto-ku, Tokyo 135–0064, 3Mizuho Information & Research Institute, Inc., 2–3 Kanda-Nishikicho, Chiyoda-ku, Tokyo 101–8443 and 4Graduate School of Frontier Sciences, University of Tokyo, 5–1–5 Kashiwanoha, Kashiwa 277–8562, Japan

*To whom correspondence should be addressed. Tel: +81 3 3599 8743; Fax: +81 3 3599 8081; Email: sato-kengo{at}aist.go.jp

Received January 30, 2009. Revised April 11, 2009. Accepted April 24, 2009.

The CENTROIDFOLD web server (http://www.ncrna.org/centroidfold/) is a web application for RNA secondary structure prediction powered by one of the most accurate prediction engine. The server accepts two kinds of sequence data: a single RNA sequence and a multiple alignment of RNA sequences. It responses with a prediction result shown as a popular base-pair notation and a graph representation. PDF version of the graph representation is also available. For a multiple alignment sequence, the server predicts a common secondary structure. Usage of the server is quite simple. You can paste a single RNA sequence (FASTA or plain sequence text) or a multiple alignment (CLUSTAL-W format) into the textarea then click on the ‘execute CentroidFold’ button. The server quickly responses with a prediction result. The major advantage of this server is that it employs our original CENTROIDFOLD software as its prediction engine which scores the best accuracy in our benchmark results. Our web server is freely available with no login requirement.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.