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Nucleic Acids Research, 1980, Vol. 8, No. 17 3829-3840
© 1980


MOLECULAR BIOLOGY

The 5'-cytosine in CCGG1 is methylated in two eukaryotic DNAS and Msp I is sensitive to methylatlon at this site

Thomas W. Sneider

Department of Biochemistry and Graduate Faculty of Cellular and Molecular Biology, Colorado State University Fort Collins, CO 80523, USA

Received May 21, 1980. Novikoff rat hepatoma and bovine liver DNAs were digested with Msp I or Hpa II. Restriction fragments were end-labeled using [{alpha}-32P]-dCTP and the Klenow fragment of E.coli DNA polymerase I and then digested to 2'-deoxyribonucleo-side-3' -monophosphates using micrococcal nuclease and spleen phosphodiesterase. Mononucleotides were separated by two-dimensional thin layer chromatography, localized by radioautography, and the [32P]-label quantitated by scintillation spectrometry. This method, based on known specificities of Msp I and Hpa II, shows that CCGG, CMGG, and MCGG (M refers to 5-methylcytosine) occur at frequencies of 89.6%, 1.4%. and 9.0%, respectively, in the rat DNA and at 41.6%, 48.3%, and 10.0%, respectively, in the bovine DNA. [32P] recovery in 3'-5-MedCMP from end-labeled Msp I digests was negligible compared to recovery from Hpa II digests. Hence, Msp I is sensitive to methylation at the 5' cytosine in the sequence CCGG.


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