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Nucleic Acids Research, 1980, Vol. 8, No. 17 3975-3982
© 1980


CHEMISTRY

Role of interaction energy in the Specificity of transcription. I-The Watson Crick G-C base pair template

Nitish K. Sanyal, U. Kumar and Mihir Roychoudhury

Department of Physics, University of Gorakhpur Gorakhpur 273001, India

Received May 27, 1980. The purpose of this work is to show that the selectivity of the nucleotide bases in RNA transcription c an be inferred, in principle from the DNA base pair - RNa base interaction. The catalytic role of enzymes in this process is, therefore, only to form the sugar - phosphate backbone. A systematic study for the evaluation of the interaction energy of the DNA base pair with the entsrant RNA bases have been undertaken to elucidate the aforesaid mechanism. Electrostatic hard sphere approximation of Nash and Bradley1 has been employed. Non bonded induced dipole and London dispersion forces are not taken into account. The present communication gives the results of computations of the interaction energy of the four RNA bases. The results have been discussed with reference to Stent's and Zubay's schemes of RNA transcription.


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