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Nucleic Acids Research, 1981, Vol. 9, No. 12 2871-2888
© 1981

MOLECULAR BIOLOGY

The complete nucleotide sequence of an infectious clone of cauliflower mosaic virus by M13mp7 shotgun sequencing

Richard C. Gardner, Alan J. Howarth, Peter Hahn, Marianne Brown-Luedi2, Robert J. Shepherd1 and Joachim Messing2,3

Department of Plant Pathology, University of California Davis, CA 95616, USA 2Department of Bacteriology, University of California Davis, CA 95616, USA

1To whom reprint requests should be addressed.

Received April 21, 1981.

We have determined the complete primary structure (8031 base pairs) of an infectious clone of cauliflower mosaic virus strain CM1841. The sequence was obtained using the strategy of cloning shotgun restriction fragments in the sequencing vector M13mp7. Comparison of the CM1841 sequence with that published for another CaMV strain (Strasbourg) reveals 4.4% changes, mostly nucleotide substitutions with a few small insertions and deletions. The six open reading frames in the sequence of the Strasbourg isolate are also present in CM1841.

3Present address: Department of Biochemistry, University of Minnesota, St. Paul, MN 55108, USA


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