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Nucleic Acids Research, 1981, Vol. 9, No. 23 6553-6570
© 1981


MOLECULAR BIOLOGY

1H NMR studies of lac-operator DNA fragments

E.R.P. Zuidenveg*, R.M. Scheek*, G. Veeneman+, J.H. van Boom+, R. Kaptein*, H. Rüterjans{dagger} and K. Beyreuther**

*Dep. Physical Chemistry, University of Groningen Groningen +Dep. Organic Chemistry, University of Leiden Leiden, The Netherlands {dagger}Institute of Biophysical Chemistry, University of Frankfurt a. M. Frankfurt a. M. **Institute of Genetics, University of Cologne Cologne, GFR

Received September 29, 1981. The hydrogen-bonded imino protons of a 14 base pair double-stranded DNA fragment comprising one half of the lac operator of E. coli were investigated by 360 MHz 1H NMR. From combined melting studies of this synthetic 14 b.p. fragment and its two constituent 7 b.p. fragments a nearly complete assignment for the low-field proton resonances was obtained. The experimental spectra are compared with calculated spectra and with the spectrum of a 51 b.p. DNA restriction fragment from E. coli containing the complete lac operator. Structural information on these oligonucleotides is presented. This study is a prerequisite for future 1H NMR investigations of the interaction of the lac operator with the lac repressor.


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