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Nucleic Acids Research Advance Access published online on April 25, 2008
Nucleic Acids Research, doi:10.1093/nar/gkn222
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Web Server

Software.ncrna.org: web servers for analyses of RNA sequences

Kiyoshi Asai1,2,*, Hisanori Kiryu2, Michiaki Hamada2,3, Yasuo Tabei1,2, Kengo Sato2,4,5, Hiroshi Matsui5, Yasubumi Sakakibara5, Goro Terai2,4,6 and Toutai Mituyama2

1Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwa-no-ha, Chiba 277-8561, 2Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, 3Mizuho Information & Research Institute, Inc., 2-3, Kanda-Nishikicho, Chiyoda-ku, Tokyo 101-8443, 4Japan Biological Informatics Consortium, 10F TIME24 Building, 2-45 Aomi, Koto-ku, Tokyo 135-8073, 5Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223-8522 and 6INTEC Systems Institute, Inc., 1-3-3 Shinsuna, Koto-ku, Tokyo 136-0075, Japan

*To whom correspondence should be addressed. Tel: +81 33599 8089; Fax: +81 33599 8081; Email: asai{at}k.u-tokyo.ac.jp

Received February 7, 2008. Revised April 3, 2008. Accepted April 10, 2008.

We present web servers for analysis of non-coding RNA sequences on the basis of their secondary structures. Software tools for structural multiple sequence alignments, structural pairwise sequence alignments and structural motif findings are available from the integrated web server and the individual stand-alone web servers. The servers are located at http://software.ncrna.org, along with the information for the evaluation and downloading. This website is freely available to all users and there is no login requirement.


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