Nucleic Acids Research Advance Access published online on October 4, 2008
Nucleic Acids Research, doi:10.1093/nar/gkn664
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Database Issue |
The Universal Protein Resource (UniProt) 2009
1The EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 2Protein Information Resource, Georgetown University Medical Center, 3300 Whitehaven St NW, Suite 1200, Washington, DC 20007, USA and 3Swiss Institute of Bioinformatics, Centre Medical Universitaire 1 rue Michel Servet, 1211 Geneva 4, Switzerland
*To whom correspondence should be addressed. Tel: +44 1223 494435; Fax: +44 1223 494468; Email: apweiler{at}ebi.ac.uk
Received September 15, 2008. Accepted September 19, 2008.
The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information that is essential for modern biological research. UniProt is produced by the UniProt Consortium which consists of groups from the European Bioinformatics Institute, the Protein Information Resource and the Swiss Institute of Bioinformatics. The core activities include manual curation of protein sequences assisted by computational analysis, sequence archiving, a user-friendly UniProt website and the provision of additional value-added information through cross-references to other databases. UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental Sequence Database. One of the key achievements of the UniProt consortium in 2008 is the completion of the first draft of the complete human proteome in UniProtKB/Swiss-Prot. This manually annotated representation of all currently known human protein-coding genes was made available in UniProt release 14.0 with 20 325 entries. UniProt is updated and distributed every three weeks and can be accessed online for searches or downloaded at www.uniprot.org.
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
J. Goll, R. Montgomery, L. M. Brinkac, S. Schobel, D. M. Harkins, Y. Sebastian, S. Shrivastava, S. Durkin, and G. Sutton The Protein Naming Utility: a rules database for protein nomenclature Nucleic Acids Res., December 8, 2009; (2009) gkp958v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Bulliard, P. Turelli, U. F. Rohrig, V. Zoete, B. Mangeat, O. Michielin, and D. Trono Functional Analysis and Structural Modeling of Human APOBEC3G Reveal the Role of Evolutionarily Conserved Elements in the Inhibition of Human Immunodeficiency Virus Type 1 Infection and Alu Transposition J. Virol., December 1, 2009; 83(23): 12611 - 12621. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Easty and N. Nikolov Client-side integration of life science literature resources Bioinformatics, December 1, 2009; 25(23): 3194 - 3196. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Terrapon, O. Gascuel, E. Marechal, and L. Brehelin Detection of new protein domains using co-occurrence: application to Plasmodium falciparum Bioinformatics, December 1, 2009; 25(23): 3077 - 3083. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Frolkis, C. Knox, E. Lim, T. Jewison, V. Law, D. D. Hau, P. Liu, B. Gautam, S. Ly, A. C. Guo, et al. SMPDB: The Small Molecule Pathway Database Nucleic Acids Res., November 30, 2009; (2009) gkp1002v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Yamazaki, R. Akashi, Y. Banno, T. Endo, H. Ezura, K. Fukami-Kobayashi, K. Inaba, T. Isa, K. Kamei, F. Kasai, et al. NBRP databases: databases of biological resources in Japan Nucleic Acids Res., November 24, 2009; (2009) gkp996v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Leplae, G. Lima-Mendez, and A. Toussaint ACLAME: A CLAssification of Mobile genetic Elements, update 2010 Nucleic Acids Res., November 23, 2009; (2009) gkp938v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Yamasaki, K. Murakami, J.-i. Takeda, Y. Sato, A. Noda, R. Sakate, T. Habara, H. Nakaoka, F. Todokoro, A. Matsuya, et al. H-InvDB in 2009: extended database and data mining resources for human genes and transcripts Nucleic Acids Res., November 23, 2009; (2009) gkp1020v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Schlicker and M. Albrecht FunSimMat update: new features for exploring functional similarity Nucleic Acids Res., November 18, 2009; (2009) gkp979v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. M. Gould, F. Diella, A. Via, P. Puntervoll, C. Gemund, S. Chabanis-Davidson, S. Michael, A. Sayadi, J. C. Bryne, C. Chica, et al. ELM: the status of the 2010 eukaryotic linear motif resource Nucleic Acids Res., November 17, 2009; (2009) gkp1016v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Smialowski, P. Pagel, P. Wong, B. Brauner, I. Dunger, G. Fobo, G. Frishman, C. Montrone, T. Rattei, D. Frishman, et al. The Negatome database: a reference set of non-interacting protein pairs Nucleic Acids Res., November 17, 2009; (2009) gkp1026v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Binns, E. Dimmer, R. Huntley, D. Barrell, C. O'Donovan, and R. Apweiler QuickGO: a web-based tool for Gene Ontology searching Bioinformatics, November 15, 2009; 25(22): 3045 - 3046. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Marsico, K. Scheubert, A. Tuukkanen, A. Henschel, C. Winter, R. Winnenburg, and M. Schroeder MeMotif: a database of linear motifs in {alpha}-helical transmembrane proteins Nucleic Acids Res., November 12, 2009; (2009) gkp1042v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Kapushesky, I. Emam, E. Holloway, P. Kurnosov, A. Zorin, J. Malone, G. Rustici, E. Williams, H. Parkinson, and A. Brazma Gene Expression Atlas at the European Bioinformatics Institute Nucleic Acids Res., November 11, 2009; (2009) gkp936v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Rhead, D. Karolchik, R. M. Kuhn, A. S. Hinrichs, A. S. Zweig, P. A. Fujita, M. Diekhans, K. E. Smith, K. R. Rosenbloom, B. J. Raney, et al. The UCSC genome browser database: update 2010 Nucleic Acids Res., November 11, 2009; (2009) gkp939v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. A. Vizcaino, R. Cote, F. Reisinger, H. Barsnes, J. M. Foster, J. Rameseder, H. Hermjakob, and L. Martens The Proteomics Identifications database: 2010 update Nucleic Acids Res., November 11, 2009; (2009) gkp964v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. S. Dehal, M. P. Joachimiak, M. N. Price, J. T. Bates, J. K. Baumohl, D. Chivian, G. D. Friedland, K. H. Huang, K. Keller, P. S. Novichkov, et al. MicrobesOnline: an integrated portal for comparative and functional genomics Nucleic Acids Res., November 11, 2009; (2009) gkp919v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Flicek, B. L. Aken, B. Ballester, K. Beal, E. Bragin, S. Brent, Y. Chen, P. Clapham, G. Coates, S. Fairley, et al. Ensembl's 10th year Nucleic Acids Res., November 11, 2009; (2009) gkp972v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Lees, C. Yeats, O. Redfern, A. Clegg, and C. Orengo Gene3D: merging structure and function for a Thousand genomes Nucleic Acids Res., November 11, 2009; (2009) gkp987v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Klucar, M. Stano, and M. Hajduk phiSITE: database of gene regulation in bacteriophages Nucleic Acids Res., November 9, 2009; (2009) gkp911v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. E. Ulrich and I. B. Zhulin The MiST2 database: a comprehensive genomics resource on microbial signal transduction Nucleic Acids Res., November 9, 2009; (2009) gkp940v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Muller, D. Szklarczyk, P. Julien, I. Letunic, A. Roth, M. Kuhn, S. Powell, C. von Mering, T. Doerks, L. J. Jensen, et al. eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations Nucleic Acids Res., November 9, 2009; (2009) gkp951v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. J. Kersey, D. Lawson, E. Birney, P. S. Derwent, M. Haimel, J. Herrero, S. Keenan, A. Kerhornou, G. Koscielny, A. Kahari, et al. Ensembl genomes: Extending ensembl across the taxonomic space Nucleic Acids Res., November 1, 2009; (2009) gkp871v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Soderlund Computational techniques for elucidating plant-pathogen interactions from large-scale experiments on fungi and oomycetes Brief Bioinform, November 1, 2009; 10(6): 654 - 663. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Libault, T. Joshi, V. A. Benedito, D. Xu, M. K. Udvardi, and G. Stacey Legume Transcription Factor Genes: What Makes Legumes So Special? Plant Physiology, November 1, 2009; 151(3): 991 - 1001. [Full Text] [PDF] |
||||
![]() |
P. Vanhee, J. Reumers, F. Stricher, L. Baeten, L. Serrano, J. Schymkowitz, and F. Rousseau PepX: a structural database of non-redundant protein-peptide complexes Nucleic Acids Res., October 30, 2009; (2009) gkp893v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Kanehisa, S. Goto, M. Furumichi, M. Tanabe, and M. Hirakawa KEGG for representation and analysis of molecular networks involving diseases and drugs Nucleic Acids Res., October 30, 2009; (2009) gkp896v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Velankar, C. Best, B. Beuth, C. H. Boutselakis, N. Cobley, A. W. Sousa Da Silva, D. Dimitropoulos, A. Golovin, M. Hirshberg, M. John, et al. PDBe: Protein Data Bank in Europe Nucleic Acids Res., October 25, 2009; (2009) gkp916v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Y. Geer, A. Marchler-Bauer, R. C. Geer, L. Han, J. He, S. He, C. Liu, W. Shi, and S. H. Bryant The NCBI BioSystems database Nucleic Acids Res., October 23, 2009; (2009) gkp858v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Aranda, P. Achuthan, Y. Alam-Faruque, I. Armean, A. Bridge, C. Derow, M. Feuermann, A. T. Ghanbarian, S. Kerrien, J. Khadake, et al. The IntAct molecular interaction database in 2010 Nucleic Acids Res., October 22, 2009; (2009) gkp878v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. J. Roberts, T. Vincze, J. Posfai, and D. Macelis REBASE--a database for DNA restriction and modification: enzymes, genes and genomes Nucleic Acids Res., October 21, 2009; (2009) gkp874v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Gaudet, L. Lane, P. Fey, A. Bridge, S. Poux, A. Auchincloss, K. Axelsen, S. Braconi Quintaje, E. Boutet, P. Brown, et al. Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase Database, October 15, 2009; 2009(0): bap016 - bap016. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Frenkel-Morgenstern, A. A. Cohen, N. Geva-Zatorsky, E. Eden, J. Prilusky, I. Issaeva, A. Sigal, C. Cohen-Saidon, Y. Liron, L. Cohen, et al. Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells Nucleic Acids Res., October 9, 2009; (2009) gkp808v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. C McCann and B. N Ames Vitamin K, an example of triage theory: is micronutrient inadequacy linked to diseases of aging? Am. J. Clinical Nutrition, October 1, 2009; 90(4): 889 - 907. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Jimenez-Lozano, J. Segura, J. R. Macias, J. Vega, and J. M. Carazo aGEM: an integrative system for analyzing spatial-temporal gene-expression information Bioinformatics, October 1, 2009; 25(19): 2566 - 2572. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Ren, Z. Liu, X. Gao, C. Jin, M. Ye, H. Zou, L. Wen, Z. Zhang, Y. Xue, and X. Yao MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore Nucleic Acids Res., September 25, 2009; (2009) gkp784v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Richardson, S. Venkataraman, P. Stevenson, Y. Yang, N. Burton, J. Rao, M. Fisher, R. A. Baldock, D. R. Davidson, and J. H. Christiansen EMAGE mouse embryo spatial gene expression database: 2010 update Nucleic Acids Res., September 18, 2009; (2009) gkp763v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. A. Florez, S. F. Roppel, A. G. Schmeisky, C. R. Lammers, and J. Stulke A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki Database, September 17, 2009; 2009(0): bap012 - bap012. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. W. Huss III, P. Lindenbaum, M. Martone, D. Roberts, A. Pizarro, F. Valafar, J. B. Hogenesch, and A. I. Su The Gene Wiki: community intelligence applied to human gene annotation Nucleic Acids Res., September 15, 2009; (2009) gkp760v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. Xiong, T. Li, K. Chen, and K. Tang Local combinational variables: an approach used in DNA-binding helix-turn-helix motif prediction with sequence information Nucleic Acids Res., September 1, 2009; 37(17): 5632 - 5640. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Faye, E. Chautard, B. R. Olsen, and S. Ricard-Blum The First Draft of the Endostatin Interaction Network J. Biol. Chem., August 14, 2009; 284(33): 22041 - 22047. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Mcwilliam, F. Valentin, M. Goujon, W. Li, M. Narayanasamy, J. Martin, T. Miyar, and R. Lopez Web services at the European Bioinformatics Institute-2009 Nucleic Acids Res., July 1, 2009; 37(suppl_2): W6 - W10. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Imanishi and H. Nakaoka Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases Nucleic Acids Res., July 1, 2009; 37(suppl_2): W17 - W22. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Gattiker, C. Dessimoz, A. Schneider, I. Xenarios, M. Pagni, and J. Rougemont The Microbe browser for comparative genomics Nucleic Acids Res., July 1, 2009; 37(suppl_2): W296 - W299. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Yang, H. Luo, J. Chen, Q. Xing, and L. He SePreSA: a server for the prediction of populations susceptible to serious adverse drug reactions implementing the methodology of a chemical-protein interactome Nucleic Acids Res., July 1, 2009; 37(suppl_2): W406 - W412. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. T.-H. Chang, T.-Y. Chien, and C.-Y. Chen seeMotif: exploring and visualizing sequence motifs in 3D structures Nucleic Acids Res., July 1, 2009; 37(suppl_2): W552 - W558. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Blankenburg, F. Ramirez, J. Buch, and M. Albrecht DASMIweb: online integration, analysis and assessment of distributed protein interaction data Nucleic Acids Res., July 1, 2009; 37(suppl_2): W122 - W128. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Makita, N. Kobayashi, Y. Mochizuki, Y. Yoshida, S. Asano, N. Heida, M. Deshpande, R. Bhatia, A. Matsushima, M. Ishii, et al. PosMed-plus: An Intelligent Search Engine that Inferentially Integrates Cross-Species Information Resources for Molecular Breeding of Plants Plant Cell Physiol., July 1, 2009; 50(7): 1249 - 1259. [Abstract] [Full Text] [PDF] |
||||








