Nucleic Acids Research Advance Access published online on June 5, 2009
Nucleic Acids Research, doi:10.1093/nar/gkp460
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Nucleic Acid Enzymes |
Conferring a template-dependent polymerase activity to terminal deoxynucleotidyltransferase by mutations in the Loop1 region
1Unité de Dynamique Structurale des Macromolécules and 2URA 2581 du C.N.R.S., Institut Pasteur, 25 rue du Dr Roux, 75015 Paris, France
*To whom correspondence should be addressed. Tel: +33 1 45 68 86 05; Fax: +33 1 40 61 37 93; Email: marc.delarue{at}pasteur.fr
Received January 23, 2009. Revised May 15, 2009. Accepted May 15, 2009.
Terminal deoxynucleotidyltransferase (Tdt) and DNA polymerase µ (pol µ) are two eukaryotic highly similar proteins involved in DNA processing and repair. Despite their high sequence identity, they differ widely in their activity: pol µ has a templated polymerase activity, whereas Tdt has a non-templated one. Loop1, first described when the Tdt structure was solved, has been invoked as the major structural determinant of this difference. Here we describe attempts to transform Tdt into pol µ with the minimal number of mutations in and around Loop1. First we describe the effect of mutations on six different positions chosen to destabilize Tdt Loop1 structure, either by alanine substitution or by deletion; they result at most in a reduction of Tdt activity, but adding Co++ restores most of this Tdt activity. However, a deletion of the entire Loop1 as in pol 
does confer a limited template-dependent polymerase behavior to Tdt while a chimera bearing an extended pol µ Loop1 reproduces pol µ behavior. Finally, 16 additional substitutions are reported, targeted at the two so-called ‘sequence determinant’ regions located just after Loop1 or underneath. Among them, the single-point mutant F401A displays a sequence-specific replicative polymerase phenotype that is stable upon Co++ addition. These results are discussed in light of the available crystal structures.