Skip Navigation



Nucleic Acids Research Advance Access published online on October 30, 2009
Nucleic Acids Research, doi:10.1093/nar/gkp892
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (138K) Freely available
Right arrow Screen PDF (149K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Turner, D. H.
Right arrow Articles by Mathews, D. H.
PubMed
Right arrow PubMed Citation
Right arrow Articles by Turner, D. H.
Right arrow Articles by Mathews, D. H.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author(s) 2009. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

Douglas H. Turner1 and David H. Mathews2,*

1Department of Chemistry and Center for RNA Biology, Box 0216, University of Rochester, Rochester, NY 14627-0216 and 2Department of Biochemistry and Biophysics and Center for RNA Biology, Box 712, University of Rochester Medical Center, Rochester, NY 14642, USA

*To whom correspondence should be addressed. Tel: +1 585 275 1734; Fax: +1 585 275 6007; Email: david_mathews{at}urmc.rochester.edu

Received August 17, 2009. Revised October 4, 2009. Accepted October 6, 2009.

The Nearest Neighbor Database (NNDB, http://rna.urmc.rochester.edu/NNDB) is a web-based resource for disseminating parameter sets for predicting nucleic acid secondary structure stabilities. For each set of parameters, the database includes the set of rules with descriptive text, sequence-dependent parameters in plain text and html, literature references to experiments and usage tutorials. The initial release covers parameters for predicting RNA folding free energy and enthalpy changes.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.