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Nucleic Acids Research Advance Access published online on November 11, 2009

Nucleic Acids Research, doi:10.1093/nar/gkp972
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© The Author(s) 2009. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.


Database Issue

Ensembl’s 10th year

Paul Flicek1,2,*, Bronwen L. Aken2, Benoit Ballester1, Kathryn Beal1, Eugene Bragin2, Simon Brent2, Yuan Chen1, Peter Clapham2, Guy Coates2, Susan Fairley2, Stephen Fitzgerald1, Julio Fernandez-Banet2, Leo Gordon1, Stefan Gräf1, Syed Haider1, Martin Hammond1, Kerstin Howe2, Andrew Jenkinson1, Nathan Johnson1, Andreas Kähäri1, Damian Keefe1, Stephen Keenan1, Rhoda Kinsella1, Felix Kokocinski2, Gautier Koscielny1, Eugene Kulesha1, Daniel Lawson1, Ian Longden1, Tim Massingham1, William McLaren1, Karine Megy1, Bert Overduin1, Bethan Pritchard2, Daniel Rios1, Magali Ruffier2, Michael Schuster1, Guy Slater1, Damian Smedley1, Giulietta Spudich1, Y. Amy Tang2, Stephen Trevanion2, Albert Vilella1, Jan Vogel2, Simon White2, Steven P. Wilder1, Amonida Zadissa2, Ewan Birney1, Fiona Cunningham1, Ian Dunham1, Richard Durbin2, Xosé M. Fernández-Suarez1, Javier Herrero1, Tim J. P. Hubbard2, Anne Parker2, Glenn Proctor1, James Smith2 and Stephen M. J. Searle2

1European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton Cambridge CB10 1SD and 2Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK

*To whom correspondence should be addressed. Tel: +44 1223 492581; Fax: +44 1223 494494; Email: flicek{at}ebi.ac.uk

Received September 18, 2009. Revised October 12, 2009. Accepted October 14, 2009.

Ensembl (http://www.ensembl.org) integrates genomic information for a comprehensive set of chordate genomes with a particular focus on resources for human, mouse, rat, zebrafish and other high-value sequenced genomes. We provide complete gene annotations for all supported species in addition to specific resources that target genome variation, function and evolution. Ensembl data is accessible in a variety of formats including via our genome browser, API and BioMart. This year marks the tenth anniversary of Ensembl and in that time the project has grown with advances in genome technology. As of release 56 (September 2009), Ensembl supports 51 species including marmoset, pig, zebra finch, lizard, gorilla and wallaby, which were added in the past year. Major additions and improvements to Ensembl since our previous report include the incorporation of the human GRCh37 assembly, enhanced visualisation and data-mining options for the Ensembl regulatory features and continued development of our software infrastructure.


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